Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00266 ATGGACAACAGCATGTCAAGGAGCACCGCACAGGCTTGCGCTGCTTGTAAGTTCCAACGTAGGAAGTGCGGTTCCAACTGCATTCTCGCACCTTATTTTCCTCATGATCGCCAAAAGCACTTCCTAAATGCACGTCGCTTATTCGGCGTTGGCAAGATCACTAATCTGCTTAAGCCCCTCGATCCCAACGAGCGTGACATCGCCATGAGCACCATCATGTACCAATCCGACATGCGTGCTCGAGACCCTGTTGGTGGCTGCTACAAGCTCATTCAGCACTTGCAGTCTCAGATCGAATACGCCAATGCCGAGCTTCACCTTGTTCTTCAGCATCTCGCTTTCTTTAGGGCACAGGCACATCAAAATAATGACATCTCCAATGTCACTTCTTCTCAGCCTTTCCTTCAACAAATGTCTcaagaacaacatcaacaataccaacaacaacaacaacaattcgaacagcagcagcagcagcaacaattcgaacaacaacaaTATGTTAATTACAATCCTTCCTTACAGGAAGACATAAACTTGTGGGCGGTTCAGAACTCGATATCTCTGTTGCCCTTATCGTTAGAAGATGACATCAACCAAGATCCTGTTGTTGATTATGATTATGATCAAAAGCCTGTTCTTGAATTGATGAATAAAATAGAATCAGATGCAACCGTTCATCCACATCATAGTGATGATGAAGCGGTTCTATTTAAGGTAGACAAAGCAGTGTTGTAA 738 0.3984 MDNSMSRSTAQACAACKFQRRKCGSNCILAPYFPHDRQKHFLNARRLFGVGKITNLLKPLDPNERDIAMSTIMYQSDMRARDPVGGCYKLIQHLQSQIEYANAELHLVLQHLAFFRAQAHQNNDISNVTSSQPFLQQMSQEQHQQYQQQQQQFEQQQQQQQFEQQQYVNYNPSLQEDINLWAVQNSISLLPLSLEDDINQDPVVDYDYDQKPVLELMNKIESDATVHPHHSDDEAVLFKVDKAVL 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00266 245 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 223 - -
Cca10g00266 245 Pfam Lateral organ boundaries (LOB) domain 12 108 IPR004883 -
Cca10g00266 245 PANTHER LOB DOMAIN PROTEIN 7 223 - -
Cca10g00266 245 Coils Coil 136 166 - -
Cca10g00266 245 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00266 Cca-Chr10 2903299 2905499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00266 11 123 AS2 family AT3G13850 63.717 3.39e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca10g00266 LOB 1.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00266 - - ccaj:114916407 418.698