Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00265 ATGGCAACCACCGAAGCAGAAGAAGCAGCCAAAAGGGTCCAATACCCCCTGGACTCTTCCTCCTACAAGCTACTCAACGAGATCGGTGCCGGCGTGAGTGCCGTCGTCTACAAAGCACTGTGCATCCCCATGAACTCCACCGCCGTAGCAATCAAATCCATAGACCTTGACCGTTCCCGGCTCGACTTGGACGATGTTCGGCGCGAAGCCAAGACCCTATCCCTCCTTTCTCACCCTAACATTCTCAAAGCACACTGTTCCTTCACTGTTGACCGCCGCCTCTGGGTGGTGATGCCATTCATGGCTGCAGGATCACTGCAATCCATCATCTCTCACTCCTTCCCCAACGGCCTAATCGAACCCTGCATTGCAGTAGTTCTCAAAGATTCCCTCAACGCACTCTCTTACCTCCACGCTCAGGGCCATCTGCACAGAGACATAAAAGCTGGCAACATTCTCGTTGACTCAAACGGCCAAGTCAAGCTTGCAGATTTTGGTGTCTCTGCTTCCATCTACGAGTCCACATGTTCCTCTCTCAAGTTCACTGATGTTGCAGGCACTCCCTATTGGATGGCTCCTGAGGTGATCCATTCCCACACGGGGTACAGTTTCAAGGCTGATATATGGTCCTTTGGGATAACAGCTTTGGAGCTTGCACATGGAAGGCCTCCTCTCTCTCACCTCCCACCTTCCAAGTCCATGATGCTCAAGATCACAAAACGCTTTCGTTTTTCTGATTTTGACAAGTATAGGAAGGGAAATGGGAAGAAATTCTCCAAGGCTTTCAAGGACATGGTTGCTTCTTGCCTCGACCAAGACCCTTCTAAGAGACCTACTGCTGACAAGTTGCTCAAACACCCCTTCTTTAAGAACTGCAAGGGCTCTGAGTGTTTGGTGAAGAATGTGCTCCAAGGGTTGCCCAGTGTGGAGAAGAGGTATAAGGAGAGCAAGGTTTGTAGTGTGCatgaagatggggagaaaggtggtgataatgatggtgatggtgatgatgatgaCCCTTCCGTGCAGGGGAAGCAGAGAAGGATAAGTGGGTGGAACTTCAACGAAGAGGGGTTGGAGCTTGAGCCTGTGTTCCCGAATGATGAGGTTAAAGAGGTTCGGTTTGGAGGGGAAACGGTTGTCCAACAAACGGGGGAGCATGTTGTGAACAGGGAAGGAATGTTGGCGACTCTGAATGTGTTGAAGGGGAGTTTGGAGCAAGAGCTGTGGCAAGTTAAGTTTCTGGTGAGCACGATACAAGGAGAGGAGACTCATCATCAAGTTCAAGTGGTTGGTGGTGATCATAGCGAGGAGCAAGAAATTTCTAGGCTGAGGGCTGAGTTGGAGAATGAGAGGAGGAAGAACACGCAGTTGGAGTTGCAGCTCCACACCTGCAAGCTCCACCTTTCTTCTCTTAGTACTTCCAAGTAA 1431 0.4871 MATTEAEEAAKRVQYPLDSSSYKLLNEIGAGVSAVVYKALCIPMNSTAVAIKSIDLDRSRLDLDDVRREAKTLSLLSHPNILKAHCSFTVDRRLWVVMPFMAAGSLQSIISHSFPNGLIEPCIAVVLKDSLNALSYLHAQGHLHRDIKAGNILVDSNGQVKLADFGVSASIYESTCSSLKFTDVAGTPYWMAPEVIHSHTGYSFKADIWSFGITALELAHGRPPLSHLPPSKSMMLKITKRFRFSDFDKYRKGNGKKFSKAFKDMVASCLDQDPSKRPTADKLLKHPFFKNCKGSECLVKNVLQGLPSVEKRYKESKVCSVHEDGEKGGDNDGDGDDDDPSVQGKQRRISGWNFNEEGLELEPVFPNDEVKEVRFGGETVVQQTGEHVVNREGMLATLNVLKGSLEQELWQVKFLVSTIQGEETHHQVQVVGGDHSEEQEISRLRAELENERRKNTQLELQLHTCKLHLSSLSTSK 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00265 476 ProSiteProfiles Protein kinase domain profile. 22 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00265 476 SUPERFAMILY Protein kinase-like (PK-like) 15 293 IPR011009 -
Cca10g00265 476 ProSitePatterns Protein kinases ATP-binding region signature. 28 52 IPR017441 GO:0005524
Cca10g00265 476 Gene3D Phosphorylase Kinase; domain 1 10 100 - -
Cca10g00265 476 Coils Coil 434 461 - -
Cca10g00265 476 MobiDBLite consensus disorder prediction 317 348 - -
Cca10g00265 476 SMART serkin_6 22 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00265 476 PANTHER SERINE/THREONINE-PROTEIN KINASE BLUS1 6 468 - -
Cca10g00265 476 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 6 468 - -
Cca10g00265 476 Gene3D Transferase(Phosphotransferase) domain 1 104 330 - -
Cca10g00265 476 Pfam Protein kinase domain 22 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00265 Cca-Chr10 2877314 2879051 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00265 9 457 MAP Kinase Kinase Kinase Kinase AT4G14480 54.049 1.36e-175 500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Cca10g00265 Pkinase 4.8e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00265 K08835 - gmx:100820227 752.666