LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca10g00265	ATGGCAACCACCGAAGCAGAAGAAGCAGCCAAAAGGGTCCAATACCCCCTGGACTCTTCCTCCTACAAGCTACTCAACGAGATCGGTGCCGGCGTGAGTGCCGTCGTCTACAAAGCACTGTGCATCCCCATGAACTCCACCGCCGTAGCAATCAAATCCATAGACCTTGACCGTTCCCGGCTCGACTTGGACGATGTTCGGCGCGAAGCCAAGACCCTATCCCTCCTTTCTCACCCTAACATTCTCAAAGCACACTGTTCCTTCACTGTTGACCGCCGCCTCTGGGTGGTGATGCCATTCATGGCTGCAGGATCACTGCAATCCATCATCTCTCACTCCTTCCCCAACGGCCTAATCGAACCCTGCATTGCAGTAGTTCTCAAAGATTCCCTCAACGCACTCTCTTACCTCCACGCTCAGGGCCATCTGCACAGAGACATAAAAGCTGGCAACATTCTCGTTGACTCAAACGGCCAAGTCAAGCTTGCAGATTTTGGTGTCTCTGCTTCCATCTACGAGTCCACATGTTCCTCTCTCAAGTTCACTGATGTTGCAGGCACTCCCTATTGGATGGCTCCTGAGGTGATCCATTCCCACACGGGGTACAGTTTCAAGGCTGATATATGGTCCTTTGGGATAACAGCTTTGGAGCTTGCACATGGAAGGCCTCCTCTCTCTCACCTCCCACCTTCCAAGTCCATGATGCTCAAGATCACAAAACGCTTTCGTTTTTCTGATTTTGACAAGTATAGGAAGGGAAATGGGAAGAAATTCTCCAAGGCTTTCAAGGACATGGTTGCTTCTTGCCTCGACCAAGACCCTTCTAAGAGACCTACTGCTGACAAGTTGCTCAAACACCCCTTCTTTAAGAACTGCAAGGGCTCTGAGTGTTTGGTGAAGAATGTGCTCCAAGGGTTGCCCAGTGTGGAGAAGAGGTATAAGGAGAGCAAGGTTTGTAGTGTGCatgaagatggggagaaaggtggtgataatgatggtgatggtgatgatgatgaCCCTTCCGTGCAGGGGAAGCAGAGAAGGATAAGTGGGTGGAACTTCAACGAAGAGGGGTTGGAGCTTGAGCCTGTGTTCCCGAATGATGAGGTTAAAGAGGTTCGGTTTGGAGGGGAAACGGTTGTCCAACAAACGGGGGAGCATGTTGTGAACAGGGAAGGAATGTTGGCGACTCTGAATGTGTTGAAGGGGAGTTTGGAGCAAGAGCTGTGGCAAGTTAAGTTTCTGGTGAGCACGATACAAGGAGAGGAGACTCATCATCAAGTTCAAGTGGTTGGTGGTGATCATAGCGAGGAGCAAGAAATTTCTAGGCTGAGGGCTGAGTTGGAGAATGAGAGGAGGAAGAACACGCAGTTGGAGTTGCAGCTCCACACCTGCAAGCTCCACCTTTCTTCTCTTAGTACTTCCAAGTAA	1431	0.4871	MATTEAEEAAKRVQYPLDSSSYKLLNEIGAGVSAVVYKALCIPMNSTAVAIKSIDLDRSRLDLDDVRREAKTLSLLSHPNILKAHCSFTVDRRLWVVMPFMAAGSLQSIISHSFPNGLIEPCIAVVLKDSLNALSYLHAQGHLHRDIKAGNILVDSNGQVKLADFGVSASIYESTCSSLKFTDVAGTPYWMAPEVIHSHTGYSFKADIWSFGITALELAHGRPPLSHLPPSKSMMLKITKRFRFSDFDKYRKGNGKKFSKAFKDMVASCLDQDPSKRPTADKLLKHPFFKNCKGSECLVKNVLQGLPSVEKRYKESKVCSVHEDGEKGGDNDGDGDDDDPSVQGKQRRISGWNFNEEGLELEPVFPNDEVKEVRFGGETVVQQTGEHVVNREGMLATLNVLKGSLEQELWQVKFLVSTIQGEETHHQVQVVGGDHSEEQEISRLRAELENERRKNTQLELQLHTCKLHLSSLSTSK	476

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Cca10g00265	476	ProSiteProfiles	Protein kinase domain profile.	22	289	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Cca10g00265	476	SUPERFAMILY	Protein kinase-like (PK-like)	15	293	IPR011009	-
Cca10g00265	476	ProSitePatterns	Protein kinases ATP-binding region signature.	28	52	IPR017441	GO:0005524
Cca10g00265	476	Gene3D	Phosphorylase Kinase; domain 1	10	100	-	-
Cca10g00265	476	Coils	Coil	434	461	-	-
Cca10g00265	476	MobiDBLite	consensus disorder prediction	317	348	-	-
Cca10g00265	476	SMART	serkin_6	22	289	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Cca10g00265	476	PANTHER	SERINE/THREONINE-PROTEIN KINASE BLUS1	6	468	-	-
Cca10g00265	476	PANTHER	SERINE/THREONINE-PROTEIN KINASE FRAY2	6	468	-	-
Cca10g00265	476	Gene3D	Transferase(Phosphotransferase) domain 1	104	330	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca10g00265	Cca-Chr10	2877314	2879051	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca10g00265	9	457	MAP Kinase Kinase Kinase Kinase	AT4G14480	54.049	1.36e-175	500

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE20-Fray	Cca10g00265		Pkinase	4.8e-59	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca10g00265	K08835		-	gmx:100820227	752.666

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