Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00254 ATGAACCGCTACGACAGTCGCTCCGGCGACCCCGCTTCGTACCGCGACCGAAGAAGTGATTCGGGCCTTGCTGCACCTTCAACCACTGGCTACGGCGGTTCAAGCAGAAGAGACTACGAAGACAGTTCCAACAAATTCAATTTGGATGGATTGCCTCATTTCGAGAAAAACTTCTACACCGAATCACCCTCCGTTAGGGCAATGACAGACGCCGAGGTTAACGACTACCGTCAACGCCGTGAAATCACTGTCGAAGGCCGTGACGTCCCCAAACCCGTTAAGACCTTTCATGATATTGGTTTTCCAGAATATGTAATGCAAGAAATTAAGAAAGCTGGCTTCGTTGAACCCACGCCTATTCAGTCACAAGGTTGGCCTATGGCTTTGAAGGGACGTGATCTTATAGGAATTGCGGAAACAGGATCCGGGAAGACGCTTGCATACTTGTTGCCTGCCATAGTGCATGTTAATGCCCAGCCAATTCTTGAACCTGGAGATGGGCCTATTGTGTTAGTTTTGGCCCCGACGCGCGAGCTTGCTGTTCAGATACAACAAGAGGCGACTAAATTTGGTGCGTCGTCGAGGATTAAGAGTACGTGCATATATGGTGGGGTTCCAAAAGGGCCTCAGGTGCGCGATCTCCAGAAAGGAGTTGAGATTGTAATTGCCACTCCGGGAAGGTTGATAGATATGCTTGAGTCGAATCATACAAACTTGCGGAGGGTCACATACCTGGTACTGGATGAAGCTGATAGGATGTTGGACATGGGGTTTGATCCTCAGATAAGGAAGATTGTCTCTCAGATTCGTCCAGACCGTCAAACTTTGTACTGGAGTGCCACATGGCCGAAGGAGGTTGAACAATTGGCAAGGCAGTTCCTTTATAACCCATACAAAGTAATTATAGGTTCTCCAGATTTAAAAGCTAACCATGCAATAAAGCAACATGTTGACATTGTTCCCGAAAAGCAGAAATATGATAAATTGGTGAAGTTGCTGGAAGATATCATGGATGGCAGCCGAATACTGATATTCATGGATACTAAGAAAGGATGTGATCAGATAACTAGGCAGCTCCGCATGGATGGTTGGCCTGCACTTTCAATTCATGGAGATAAAAGTCAAGCAGAAAGAGATTGGGTGCTCTCAGAGTTTAAATCTGGAAAGAGCCCTATAATGACTGCAACAGATGTTGCAGCTCGTGGTTTAGATGTGAAGGATGTGAAGTATGTGATAAATTATGACTTCCCGGGATCACTTGAGGATTATGTTCATCGCATTGGTCGAACAGGGAGAGCTGGTGCAAAAGGAACTGCATACACATTCTTCACAGCTGCTAATGCCAGATTTGCGAAGGAACTTATAACCATTCTTGAGGAAGCTGGACAGAGAGTGAGTCCTGAATTGGCTGCAATGGGGCGTGGTGCACCCCCTCCACCTGCAGGAGGTTTCCGAGATCGTGGGAAGGGTTATGGCAGTGGTCGCCCATGGAGCTGA 1497 0.4729 MNRYDSRSGDPASYRDRRSDSGLAAPSTTGYGGSSRRDYEDSSNKFNLDGLPHFEKNFYTESPSVRAMTDAEVNDYRQRREITVEGRDVPKPVKTFHDIGFPEYVMQEIKKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILEPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNHTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLYNPYKVIIGSPDLKANHAIKQHVDIVPEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQRVSPELAAMGRGAPPPPAGGFRDRGKGYGSGRPWS 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00254 498 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 246 254 IPR000629 -
Cca10g00254 498 MobiDBLite consensus disorder prediction 22 37 - -
Cca10g00254 498 MobiDBLite consensus disorder prediction 470 498 - -
Cca10g00254 498 CDD DEADc_DDX5_DDX17 105 300 - -
Cca10g00254 498 Pfam Helicase conserved C-terminal domain 325 434 IPR001650 -
Cca10g00254 498 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 125 300 IPR014001 -
Cca10g00254 498 SMART ultradead3 113 316 IPR014001 -
Cca10g00254 498 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 328 473 IPR001650 -
Cca10g00254 498 PANTHER LD32873P 36 484 - -
Cca10g00254 498 SMART helicmild6 353 434 IPR001650 -
Cca10g00254 498 MobiDBLite consensus disorder prediction 1 46 - -
Cca10g00254 498 Gene3D - 57 303 IPR027417 -
Cca10g00254 498 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 36 484 - -
Cca10g00254 498 Gene3D - 304 474 IPR027417 -
Cca10g00254 498 CDD SF2_C_DEAD 313 443 - -
Cca10g00254 498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 450 IPR027417 -
Cca10g00254 498 MobiDBLite consensus disorder prediction 1 17 - -
Cca10g00254 498 Pfam DEAD/DEAH box helicase 118 289 IPR011545 GO:0003676|GO:0005524
Cca10g00254 498 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 94 122 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00254 Cca-Chr10 2764787 2769910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00254 81 454 Eukaryotic Initiation Factors Gene Family AT3G19760 34.309 3.17e-76 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00254 K12823 - gmx:100781619 897.886