Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00250 ATGGCTATAGCAATGGAGGAAAAGCCTAAGCTCATCCATGGAACAATTGAAGCTACCATTTTCAATGCCACACCTTACTCACCTTCATTTCCCTTCAATTGTGTGTTTACAAATGGAAAGCCTGCATATGTGACCATCATGATAGATAACAAGAAGGTGGCGAAAACGACACAAGAAAGTGAACGTGTCTGGAACCAAACCTTTCAGATTCAGTGTGCTCATCCAGCAGATTCAATTATCACCCTTACACTGAAAACATCATGCACAATTTTGGGGAAATTCCACATGCAGGCACAGCGGTTGGAGGAAGAGAGTTTGATCAATGGTTTGTTCCCTCTCCTCATGGAAAATGGAAAACCAAACCCACAACTGAAGTTAAGATTCATGCTATGGTACAAGCCAGCAGATTTGGAACCAAGTTGGACAAAGCTACTAAGCAATGGGGAGTTTCAAGGGCTGAGGGATTCTACATTCTCACAAAGGTCCAATTGCCAAGTTAAGCTCTATCATGATGCCCATCATTCATCAACTTTCCACCCTCCTTTTGATCTTTGTGGAGCTCCAAGAAAACTGTGGGAAGATGTCTATAAAGCCATTGAGGGTGCAAAGTATTTAGTTTATATTGCAGGCTGGTCCTTCAATCCCAAGATGGTTCTGGTTAGAGATCCTCAAACAGAAATTCCACATGCCAGGGAGATAAAGCTGGGCGAGCTATTGAAGAAGAAGGCAGAGGAAGGGGTGGCTGTGAGGGTTATGATTTGGGATGATGAAACATCTTTGCCTTTTATCAAGAACAAAGGTGTGATGAACACTCATGATGAGGATGCTTTTGCATACTTCAAACACACAAAAGTAGTATGCAGAAAGTGTCCCAGGTTACACCACAAGTTCCCCACACTCTTTGCTCACCATCAGAAGGCCATAACTGTGGACACCAGAACACCCAACTCTGTTCATGCCAGAGAAATTATGAGCTTCTTGGGTGGTTTAGATTTGTGTGATGGCCGGTATGACACAGAGCAACACTCATTGTTTCAAACACTTGGTGAGGAATCACATTACCATGATTTCTACCAGACAAACATAGCAGGAGCTAGCCTCAACAAAGGAGGGCCAAGAGAGCCTTGGCATGATGCTCATGCTTGTGTTATTGGTGAGGCCGCTTGGGATGTTTTAACCAATTTTGAGCAAAGATGGACTAAGCAATGTGATCCTTCACTTCTAGTCCCTGCTAGCACCTTGGAAAATCTCATTCCCACATGCTCAAGCCCTCCCAAAGAGAGGAATTGGAAAGTTCAAGTGTTCAGGTCAATTGACCATGTGTCTGCTAGCCAGTTGTTTCGAAAGCTAACTGTAGAGAGAAGCATCCATGAAGCTTATGTTGAAGCAATTAGGCGTGCTGATAGGTTTGTGTACATTGAAAACCAATATTTTATTGGAGGGTGCCATTTGTGGCAGAAAGATAGGAATAGTGGATGTAGGAATCTAATTCCTGTGGAGATCGCACTAAAGGTAGTCAGTAAGATTAAAGCAAGAGAGAGGTTTGCAGTGTACATTGTCATACCAATGTGGCCAGAAGGAGTGCCTGAAAGTGAACCAGTTCAAGATATACTGCATTGGACCAGAGAAACAATGACAATGATGTATAAGTTGATTGGAGAAGCAATAATAGAAAGTGGAGAGCCAGCACATCCAAAAGACTACTTGAATTTCTTCTGCCTTGCAAATAGGGAAAAGAAGGAAAAAGATGAGTATCTTCCACCACATCCTCCCCATCCTGAAACACAATACTGGAATGCACAAAAAAATAGGAGGTTCCCGGTTTATGTTCACTCCAAGATCATGATAGTGGACGACCTATACATACTAATAGGATCAGCCAATGTGAACCAAAGATCCATGGATGGGCAAAGGGACACTGAGATTGCCATAGGGGCCTATCAGTATCAAGAAGGAGCTGATCACCACATAAGCCATGGTGATATTCATGCATACAGAATTTCACTGTGGTATGAACACACTAGAAGCGCTGAGGAACTGTTCCTAGAGCCAGAAAATTTGGCATGTGTTCAGAGAATTCGGTCAATAGGGGATCACATGTGGGAAATGTACAGTAGTGAAGAAGTTGTGGACATGGAAGGTGTGCACCTTGTAACATACCCTGTGAAAGTAACCCAAGAAGGGTCTGTGGAGGATGGTGGGGATCATTTTCCTGATACAAAATGTGCAGTGAAGGGGAAGAGATCAAAATTCCTAGCTCCTATCTTTACTACTTAA 2277 0.43 MAIAMEEKPKLIHGTIEATIFNATPYSPSFPFNCVFTNGKPAYVTIMIDNKKVAKTTQESERVWNQTFQIQCAHPADSIITLTLKTSCTILGKFHMQAQRLEEESLINGLFPLLMENGKPNPQLKLRFMLWYKPADLEPSWTKLLSNGEFQGLRDSTFSQRSNCQVKLYHDAHHSSTFHPPFDLCGAPRKLWEDVYKAIEGAKYLVYIAGWSFNPKMVLVRDPQTEIPHAREIKLGELLKKKAEEGVAVRVMIWDDETSLPFIKNKGVMNTHDEDAFAYFKHTKVVCRKCPRLHHKFPTLFAHHQKAITVDTRTPNSVHAREIMSFLGGLDLCDGRYDTEQHSLFQTLGEESHYHDFYQTNIAGASLNKGGPREPWHDAHACVIGEAAWDVLTNFEQRWTKQCDPSLLVPASTLENLIPTCSSPPKERNWKVQVFRSIDHVSASQLFRKLTVERSIHEAYVEAIRRADRFVYIENQYFIGGCHLWQKDRNSGCRNLIPVEIALKVVSKIKARERFAVYIVIPMWPEGVPESEPVQDILHWTRETMTMMYKLIGEAIIESGEPAHPKDYLNFFCLANREKKEKDEYLPPHPPHPETQYWNAQKNRRFPVYVHSKIMIVDDLYILIGSANVNQRSMDGQRDTEIAIGAYQYQEGADHHISHGDIHAYRISLWYEHTRSAEELFLEPENLACVQRIRSIGDHMWEMYSSEEVVDMEGVHLVTYPVKVTQEGSVEDGGDHFPDTKCAVKGKRSKFLAPIFTT 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00250 758 PIRSF PLD_plant 4 758 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Cca10g00250 758 PANTHER PHOSPHOLIPASE D ALPHA 7 758 - -
Cca10g00250 758 Pfam Phospholipase D Active site motif 610 633 IPR001736 GO:0003824
Cca10g00250 758 Gene3D Endonuclease Chain A 178 423 - -
Cca10g00250 758 Pfam C2 domain 42 113 IPR000008 -
Cca10g00250 758 Gene3D Endonuclease Chain A 424 653 - -
Cca10g00250 758 PANTHER PHOSPHOLIPASE D 7 758 IPR015679 -
Cca10g00250 758 Pfam Phospholipase D C terminal 678 747 IPR024632 -
Cca10g00250 758 SMART pld_4 606 633 IPR001736 GO:0003824
Cca10g00250 758 SMART pld_4 299 336 IPR001736 GO:0003824
Cca10g00250 758 SUPERFAMILY Phospholipase D/nuclease 148 410 - -
Cca10g00250 758 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 299 336 IPR001736 GO:0003824
Cca10g00250 758 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 606 633 IPR001736 GO:0003824
Cca10g00250 758 SUPERFAMILY Phospholipase D/nuclease 425 689 - -
Cca10g00250 758 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 10 129 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00250 Cca-Chr10 2739061 2742283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00250 34 758 Phospholipase D Gene Family (Wang group) AT1G55180 62.297 0.0 961
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00250 K01115 - gmx:100807431 1425.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00250 10 2739061 2742283 Cca10g00250 10 2739061 2742283 ECH
Cca10g00250 10 2739061 2742283 Cca11g00314 11 4018660 4022434 PCT