Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00248 ATGGACGCTGAAGCGGGCCCTCCTCAAAACCCTACCTCAAGACACAAATGCTCGGCATGCTATAAGCAATATAAGAAAAAAGAGCATCTTATTGAGCACATGAAAACCTCGTACCATTCTGTCCATCAGCCTAGATGTGGGGTTTGTCAAAAGCACTGCAAATCTTTTGAGTCTCTGAGGGAACATCTTACTGGTCCTCTGCCGAAAGGAATTTGTTCGAAGCTTTTCTCTCAACAGGGCTGTCAACTCTGCTTGGCACTATTTGATAGTCCCAGGTCTCTCAATGATCATAGAGAAACATGTTGCCTTTCTGCCCCTACACGGCTAGGAACAAGCACTGTACCTGATATGGATTCCCAATTTGATTGTCAGTACTCTTCTGATGAAAACCATGCTGGGGGGTTCCCTGGAGCAGTTGCAATAGACTGTGAAATGGTTGGTGGTGGAAGTGATGGTTCACTGGAACTTTGTGCTAGAGTATGTTTGGTTGATGAAGATGAGAACTTAATCTTCCACACATATGTAAAACCTGGAATTCCTATCACTAACTATAGATATGATATAACTGGATTGACAGAAGAGCATCTCAGAGATGCCATGCCACTTAAGGAAGTTCGAGAAAAGATATTGCAAATTTTACACAATGCAGAATCAATCAGCAAAGTTAGACTGGATGGTGGAAAGGCCAGGCTTCTTGTGGGGCATGACTTAGCACATGACTTATATTGCTTGAATATGCATTATCCAGATCATATGCTGAGAGACACTGCAAAGTACCGTCCATTGATGAAAACAAACATGGTCAGCCATTCGCTCAAGTATCTAACAAGAACCTATCTCGGTTATGACATCCAATCCGGCACTCATGACCCGTATGAAGATTGTATTTCTGTGATGAGACTATACAAGAGAATACGAGGTCAAATTCATGCAGAGGAAGATCATAGAACATTGACTCCGAGAAACAACATTGTTGCCATACCTGATAGCTGGAAATCCAAGGAACTTGAAAACCTCACCCCAGATGAACTTTATGCCATTTCAAAATCCGACTACAAGTGTTGGTGCTTGGATTTGAGGCCAAGATTGGCAGCCTGA 1098 0.4271 MDAEAGPPQNPTSRHKCSACYKQYKKKEHLIEHMKTSYHSVHQPRCGVCQKHCKSFESLREHLTGPLPKGICSKLFSQQGCQLCLALFDSPRSLNDHRETCCLSAPTRLGTSTVPDMDSQFDCQYSSDENHAGGFPGAVAIDCEMVGGGSDGSLELCARVCLVDEDENLIFHTYVKPGIPITNYRYDITGLTEEHLRDAMPLKEVREKILQILHNAESISKVRLDGGKARLLVGHDLAHDLYCLNMHYPDHMLRDTAKYRPLMKTNMVSHSLKYLTRTYLGYDIQSGTHDPYEDCISVMRLYKRIRGQIHAEEDHRTLTPRNNIVAIPDSWKSKELENLTPDELYAISKSDYKCWCLDLRPRLAA 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00248 365 Gene3D - 136 319 IPR036397 GO:0003676
Cca10g00248 365 ProSiteProfiles Zinc finger C2H2 type domain profile. 15 44 IPR013087 -
Cca10g00248 365 SMART exoiiiendus 137 311 IPR013520 -
Cca10g00248 365 ProSitePatterns Zinc finger C2H2 type domain signature. 17 39 IPR013087 -
Cca10g00248 365 Gene3D Classic Zinc Finger 2 65 - -
Cca10g00248 365 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 12 361 - -
Cca10g00248 365 SUPERFAMILY Ribonuclease H-like 139 306 IPR012337 -
Cca10g00248 365 CDD REX4_like 139 303 IPR037431 GO:0006364|GO:0008408
Cca10g00248 365 Pfam Exonuclease 139 302 IPR013520 -
Cca10g00248 365 PANTHER EXONUCLEASE FAMILY PROTEIN 12 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00248 Cca-Chr10 2723398 2726946 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00248 1 358 C2H2 Transcription Factor Family AT3G27970 53.005 5.15e-136 390