Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00247 ATGAGTCGAGAACAACAGAAACGAGGGAAGCAAGAAAAGGGTTCCGATGGTGCTGAAAAGGTTATTGTTGCTGTTAAGGCAACAAAGGAAATTCCAAAGACTGCTCTTGTTTGGTCCCTAACTCATGTTGTGCAACCTGGTGATTGCATTACCCTACTAGTGGTTGTACCTTCACAAAGTTCAGGCCGAAGATTATGGGGTTTTCCAAGGTTTGCTGGTGACTGTGCCAATGGTCACAAGAAATCTAATTCAGGATCAAGTTCAGAACAGAAGAGTGATATTACTGATTCTTGCTCTCAAATGATCCTCCAGCTCCATGATGTCTATGATCCTAACAAGATAAATGTGAAGATTAAAATTGTTTCTGGATCACCCTGCGGAGCAGTGGCTGCAGAAGCCAAGAAAGTCCAAGCCAATTGGGTCGTATTAGACAAGCAGCTAAAACATGAGGAAAAACAATGCATCGAAGAGCTGCAGTGCAACATTGTGGTTATGAAGCGTTCCCAACCCAAGGTACTCCGCTTGAATTTGGTTGGATCAAAAAAGAAAGATCTTGAAGAATTATGTCCATTACCTTCTGAGCAAGATGAGGTGCCTGGAAAACAAACCAAGAAGAATGATTCATTGAATTCCATTAAAGGACCAGTTGTCACTCCAACTAGCAGCCCTGAGCTTGGGACACCGTTTACTGCAACTGAAGCTGGTACTTCATCAGTTTCCAGCTCTGATCAAGGAACTTCACCATTTTTGATCTCTGAGATGAATGGTGAATCAAAGAAAGAAGAAACTATCAAAGAAAATCCAGAATTTGATGATTCTATATCAGACACCGACAGTGAAAGTTTGTCCACATCTTCAGCTAGCTTGAGATTCCAGCCATGGATCACAGATTTACTTTTGCATCAACGATCATCACAACCTAAGGAAGCAAGAACAGAGATGTCTCATAATAGGCTTCAATCATCTACCACTAGAGCTTTGCTAGAAAAAGAAGCAATAGCATTATCTAGAAACACCCCACCTTGTCCACCTCCGTTATGTTCAATATGTCAACACAAGGCTCCTGTTTTTGGTAAACCTCCTAGATGGTTCAGCTATGCTGATTTGGAGCTTGCCACTGGTGGATTTTCACAAGCCAATTTCTTGGCAgaaggaggatttggatctgttcacagaggggttctaccggatggacaagtcattgctgttaagcaacataaattggccagttctcagggtgatcttgaattctgctcagaggTAGAAGTCCTGAGCTGTGCTCAGCACCGAAATGTTGTTATGTTGATTGGGTTTTGTATTGAGGATAAGAGAAGGCTATTGGTTTATGAGTACATATGTAATGGATCATTGGATTCTCATTTATATGGGAGGCAGCGAGAACCATTAGAATGGTCTTCCCGGCAAAAAATTGCTGTTGGTGCTGCTCGAGGGTTGCGATACCTTCATGAAGAGTGCAGAGTGGGTTGCATTATCCACCGTGACATGCGGCCAAACAACATTCTTATTACTCATGATTTTGAACCACTGGTTGGTGATTTTGGTCTGGCAAGGTGGCAGCCTGATGGTGACACAGGAGTGGAAACGAGAGTAATTGGAACATTTGGGTACTTGGCTCCTGAATATGCTCAAAGCGGCCAAATTACTGAAAAGGCTGATGTTTATTCCTTTGGTGTGGTATTAGTGGAACTAGTTACGGGACGAAAAGCCGTCGATCTCAATCGGCCCAAGGGACAACAGTGTCTTACTGAGTGGGCACGACCACTATTAGAAGAATATGCCATTGAGGAACTGATTGATCCAAGGTTGGGAAGTCACTATTCGGAACATGAGGTCTATTGCATGCTACATGCTGCCTCCTTATGCATAAGGCGAGATCCTTATTCTAGACCACGCATGTCACAGGTTCTGCGAATACTGGAGGGTGATACAGTCATGGATCTAAATTGCATTTCAACTCCCAGTTATGATGTGGGAAACCGGAGTGGTTAA 2010 0.4065 MSREQQKRGKQEKGSDGAEKVIVAVKATKEIPKTALVWSLTHVVQPGDCITLLVVVPSQSSGRRLWGFPRFAGDCANGHKKSNSGSSSEQKSDITDSCSQMILQLHDVYDPNKINVKIKIVSGSPCGAVAAEAKKVQANWVVLDKQLKHEEKQCIEELQCNIVVMKRSQPKVLRLNLVGSKKKDLEELCPLPSEQDEVPGKQTKKNDSLNSIKGPVVTPTSSPELGTPFTATEAGTSSVSSSDQGTSPFLISEMNGESKKEETIKENPEFDDSISDTDSESLSTSSASLRFQPWITDLLLHQRSSQPKEARTEMSHNRLQSSTTRALLEKEAIALSRNTPPCPPPLCSICQHKAPVFGKPPRWFSYADLELATGGFSQANFLAEGGFGSVHRGVLPDGQVIAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDSHLYGRQREPLEWSSRQKIAVGAARGLRYLHEECRVGCIIHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEEYAIEELIDPRLGSHYSEHEVYCMLHAASLCIRRDPYSRPRMSQVLRILEGDTVMDLNCISTPSYDVGNRSG 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00247 669 ProSiteProfiles Protein kinase domain profile. 376 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00247 669 SUPERFAMILY Protein kinase-like (PK-like) 360 654 IPR011009 -
Cca10g00247 669 PANTHER KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN 16 331 - -
Cca10g00247 669 MobiDBLite consensus disorder prediction 188 281 - -
Cca10g00247 669 PANTHER OS01G0253100 PROTEIN 339 667 IPR045271 GO:0004714|GO:0006468
Cca10g00247 669 CDD USP_Like 20 143 - -
Cca10g00247 669 Gene3D Phosphorylase Kinase; domain 1 348 451 - -
Cca10g00247 669 MobiDBLite consensus disorder prediction 204 253 - -
Cca10g00247 669 ProSitePatterns Tyrosine protein kinases specific active-site signature. 497 509 IPR008266 GO:0004672|GO:0006468
Cca10g00247 669 CDD STKc_IRAK 382 648 - -
Cca10g00247 669 Pfam Protein tyrosine and serine/threonine kinase 380 645 IPR001245 GO:0004672|GO:0006468
Cca10g00247 669 Gene3D Transferase(Phosphotransferase) domain 1 452 656 - -
Cca10g00247 669 MobiDBLite consensus disorder prediction 255 272 - -
Cca10g00247 669 PANTHER OS01G0253100 PROTEIN 16 331 IPR045271 GO:0004714|GO:0006468
Cca10g00247 669 PANTHER KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN 339 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00247 Cca-Chr10 2716990 2720631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00247 356 669 Trihelix Transcription Factor Family AT1G70460 51.724 4.35e-102 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Cca10g00247 PK_Tyr_Ser-Thr 8.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00247 - - gmx:100789216 1228.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00247 10 2716990 2720631 Cca10g00247 10 2716990 2720631 ECH
Cca10g00247 10 2716990 2720631 Cca11g00309 11 3978520 3982505 PCT