Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00242 ATGCAGGATCCAACGTTGTTCCAGCCCATCAAACCCCACTTTCCCGAACAAGAACAACTCAAGTGCCCGCGTTGTGATTCCACCAACACCAAATTCTGCTACTACAACAACTACAACCTCTCTCAGCCACGCCATTTTTGCAAGAACTGCAGAAGGTATTGGACCAAAGGTGGTGCCTTGAGAAACATCCCCGTGGGGGGTGGAAGCAGAAAGAACACAAAACGATCATCAAATAACGCCAAACGccctgcaccatcaccctcaccctcctctgcacccGTCTCAGAACCCGACCCGACCCGGAATCACCCCAACCCGGTGGATCAGAGCACAAGGATGCTTAGTGTTGGTGGGAGTTTCAGTTCCCTTTTGGCATCAAGTGGCCACTTGGGGAACCTCTTGGAGGGTCTCAATTCAAGTGGGTCGAGTCTAAAAATTGTGCAAATGGAAGAGTTTGGGGAGAATGTTTCGGGTCAAGTGGTGGATCCGGGTTCGGGTCGGAATCCTGGGTTGGATATGCAAAGTGATGGCGCTGCAGAGAGTTTTCTGAGTATGCAAAATGGTGACACAAGCTGTTGGAATGGGACTAATGGGTGGTCTAACCTTGCTATTTACACTCCTGGCTCAAGCTTTCAGGAGGATCACAAACCAGAAGAAGGCCACTCAATAGGATCAATTAGCTCAAACAAATTCCCTCCTCGCGCTCTCTCTTCAGCTCCACCCACCACTTTCGTTCAAATTCCAAAGAACATAAAGGATTTTAAATTTGTGAAGGGGCTGTCATGCTGA 789 0.4651 MQDPTLFQPIKPHFPEQEQLKCPRCDSTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKNTKRSSNNAKRPAPSPSPSSAPVSEPDPTRNHPNPVDQSTRMLSVGGSFSSLLASSGHLGNLLEGLNSSGSSLKIVQMEEFGENVSGQVVDPGSGRNPGLDMQSDGAAESFLSMQNGDTSCWNGTNGWSNLAIYTPGSSFQEDHKPEEGHSIGSISSNKFPPRALSSAPPTTFVQIPKNIKDFKFVKGLSC 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00242 262 MobiDBLite consensus disorder prediction 222 240 - -
Cca10g00242 262 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677|GO:0006355
Cca10g00242 262 MobiDBLite consensus disorder prediction 210 240 - -
Cca10g00242 262 PANTHER DOF ZINC FINGER PROTEIN DOF3.1-LIKE 2 212 - -
Cca10g00242 262 MobiDBLite consensus disorder prediction 61 113 - -
Cca10g00242 262 MobiDBLite consensus disorder prediction 95 113 - -
Cca10g00242 262 MobiDBLite consensus disorder prediction 69 85 - -
Cca10g00242 262 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 2 212 IPR045174 GO:0003700|GO:0006355
Cca10g00242 262 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677|GO:0006355
Cca10g00242 262 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00242 Cca-Chr10 2656559 2661092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00242 11 134 C2C2-Dof Transcription Factor Family AT1G51700 58.993 8.35e-45 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Cca10g00242 zf-Dof 3.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00242 - - gmx:100798927 306.219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00242 10 2656559 2661092 Cca10g00242 10 2656559 2661092 ECH
Cca10g00242 10 2656559 2661092 Cca11g00299 11 3759124 3760437 PCT