Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00236 ATGGATGGTCTAAGTTGGGATGGATCATCACAACTTGTTGCTAACAGTCCAATCTTGTGGAGCACTGAGCCCCAAGACCTTGAAGGATATCACTACCACCCCATGCCCCACCTAAGTTCAAGTGTTCTCAATCAAACGGGTTTTCTGTATCCCAGTTCTGAAAAAGTGAGGGACATGGTTGAGTCATCCACTTCTGAGATGATGAGTGTGATGGCAAACAGAAACACAAATCTACTGGTACAAAGAGCATCAACCATGCCTGTGAAATCACGAGCAGCTGGAGCCACTTGGGAAGAGGCTTTAACATCACGCCCGTCCCTTTCGGTCAATGTGAACCAAACTAGTAACTATGTGGCAGATTTCAACATGGTCCACCAGCAACAACACCTTATCAATGGCACACAAAACGGCAAGGCTACATGCTCTCTTGAGTCACTTGATTGCTTGCTTTCAGCCACTAATAACAGCAACACAGACACGTCTGTCGAAGACGATGACGGGATTTCCATGATTTTATCTGACTGCAGAAACTTATGGAACTTCAGTTATGGCAGTGCAGTTTCATCTGGTGAGTCTGAGAGCAATGCGTCCAATGCTAGAAGTAAAAACAGTGACATGGGGTATCAAGTCAATGAGCTGGATGAAACAGTATCTCAAAGTTTCTCTGATAAATATCTCACTCCAGGAGGAGTTATAGATTCTGAAGTTATTTGCACAAAAAGGAGCAATTCCTGCTTCAGCATTGCTCAGAATTCTTCTACCACTGAAGGTGGTTTCAGGCTTATCTCGGAGACTTTACCGAAGTCCAAGAAACCCAAGTGGGATCATAAGCGTCCTGGTTCATCAAACATCAACTTCCAGCAGCCAAATTCATCTATGACACCTTCTTCCTTAGAAGAGCCTGATCCTGAGGCCATAGCACAAATGAAGGAAATGATATATAGAGCTGCAGCTTTTAGGCCAGTGAACTTGGGCATGGAAGTGGTAGAGAAGCCTAAAAGGAAGAATGTCAAGATATCAACTGATCCACAAACTGTGGCTGCCAGGCAAAGAAGGGAGAGAATAAGTGAGAGGATTAGGGTTTTGCAGAAGATTGTGCCTGGTGGAAGCAAGATGGACACTGCATCAATGCTTGATGAAGCTGCAAACTACCTCAAGTTTCTCAGATCACAAGTCAAAGCACTAGAAAATCTAGGTAACAAGCTTGACACAATGAATTGTCCTCCAACTAACATAGCCTTCTCTTTCAACCCTTCTTTTCCCGTACAAACACATTTCCCCATCCAAAACCCTAGCAGCCACATCCAACATTCCAAGGGTTGA 1323 0.4422 MDGLSWDGSSQLVANSPILWSTEPQDLEGYHYHPMPHLSSSVLNQTGFLYPSSEKVRDMVESSTSEMMSVMANRNTNLLVQRASTMPVKSRAAGATWEEALTSRPSLSVNVNQTSNYVADFNMVHQQQHLINGTQNGKATCSLESLDCLLSATNNSNTDTSVEDDDGISMILSDCRNLWNFSYGSAVSSGESESNASNARSKNSDMGYQVNELDETVSQSFSDKYLTPGGVIDSEVICTKRSNSCFSIAQNSSTTEGGFRLISETLPKSKKPKWDHKRPGSSNINFQQPNSSMTPSSLEEPDPEAIAQMKEMIYRAAAFRPVNLGMEVVEKPKRKNVKISTDPQTVAARQRRERISERIRVLQKIVPGGSKMDTASMLDEAANYLKFLRSQVKALENLGNKLDTMNCPPTNIAFSFNPSFPVQTHFPIQNPSSHIQHSKG 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00236 440 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 339 388 IPR011598 GO:0046983
Cca10g00236 440 MobiDBLite consensus disorder prediction 280 298 - -
Cca10g00236 440 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 438 IPR045843 GO:0003700|GO:0006355
Cca10g00236 440 MobiDBLite consensus disorder prediction 268 300 - -
Cca10g00236 440 Gene3D - 344 407 IPR036638 GO:0046983
Cca10g00236 440 Coils Coil 378 398 - -
Cca10g00236 440 Pfam Helix-loop-helix DNA-binding domain 349 388 IPR011598 GO:0046983
Cca10g00236 440 SMART finulus 345 394 IPR011598 GO:0046983
Cca10g00236 440 MobiDBLite consensus disorder prediction 187 206 - -
Cca10g00236 440 PANTHER TRANSCRIPTION FACTOR BHLH87 1 438 - -
Cca10g00236 440 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 344 404 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00236 Cca-Chr10 2592715 2594037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00236 109 437 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 51.622 5.55e-92 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca10g00236 HLH 1.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00236 - - gmx:100793830 648.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00236 10 2592715 2594037 Cca10g00236 10 2592715 2594037 ECH
Cca10g00236 10 2592715 2594037 Cca11g00285 11 3556084 3558337 PCT