Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00235 ATGAAAGGACGCTTTCTACTTCTCATGTTTCAACTCTCTTTAACTCTTCCTATCATTGTTCATGCTCAGAATCAATCAGCCTTCATTAGTATTGATTGTGGACTTGTGGATGAACCAAGCTACACAGATGAAACTACTTCCATCTATTACTCTTCGGATGTCAATTTCACAGACAGTGGTGTAAGCCACAGCATATCACCTAAATATAAGGCTTCCCTTGACAGGCAATTCTGGAAAGTTAGAAGCTTCCCAGATAGAACCAGGAACTGCTATACCCTTGTTGTTCCTCAAGGAAGTGACAAAAAATATTTATTGAGGGCCAGGTTTGCATATGGAAATTATGATGGAAAAGACTTTCTTCCTGAATTTGATATCTATCTTGGAGACAGGTGGTGGGGATCTGTGGTGTTTGAGGATGTATCTAGTGTAGTCACCAAGGAAATCATTTATGCTGCTTCATCAGATTATGCTCATGTTTGTTTATTCAACACGCACAAGGGTACACCTTTTATTTCAGTTTTGGAGCTTAGAGTTCTTAACGGTGATGCCTATCTAGCTAACTATTTGGAGCTATTGGCACGGTATGATGTAGGCTTACATGATGGTGAAATAATCAGATATCCAGATGATGTCTATGATAGAATGTGGACACCTTATAACTCAATTGACTGGAGAAAGATAGATACCACCCTCACCATAGATCAAGATGCTATTTCATATAATTTTTTACCATTGCCACCCTCTGTTGTCATGGAAACTGCAGCAATTCCAGCAAATGTCAATGGTGATATAAATTTCCGCTTCCTCCCCAAGAATAATGCCTCCTCCTCATGTTATGTGTACATGTACTCTGCTGAAATTCAGAAGCTCCAGGCAACTGAAATTAGAGAGTTCAACATTTTTGTAGATGGGGAGATTTTAAATAATGCTCCGATCAATCCTTTGTACCTGCAGAGCGTGTATTATGCAGCTATTTCAAGTGAACGTCCGTTGGAACTTTGGATCAACAAAACTAGTAGATCAACTCTTCCACCTCTCCTCAATGGCATTGAGATATACATGGCAAAAAACTTCTCACAATCAGAAACATATCAAACAGATGTTGATGGTATCATAAATGTCAAGTCAATCTATGGGATCAAGAGAAACTGGCAAGGAGATCCTTGTACTCCACGGACTTACTTGTGGGATGGTATTAACTGCAGCTATGCTGAATCTGGTTCACCAAGGATCATATACTTGAACTTATCTTCCAGTGGTTTAATTGGAAATATAGCTCATGGCATATCCAATCTGCAGTCCATAGAATATTTGGATTTGTCACACAACAATTTGACTGGGGTCGTGCCTGAATTCCTACATCAACTACGCTTCTTACGAGTTCTAAACCTAGGAGGCAATCAACTATCAGGAACAATTCCAACGCAACTCATTGTACGTTCAAAGAATGGTTTGCTTGAATCCGATTTTGGTGGAAATCCAAATCTTTGCGCCCCCGGTTCATGCAACAAGAAGAATGGGAATAAGGTTGTAGTTTCACTGGTGGCATCTCTCGGTGGAGCTTTCATTATACTAGTGATAACTGTGATTTCTTTATGCATATACAAAACGAGACAAGTTTCAACTCGTCGGAGCAAGCAGATTGCTTATTCCACAATAAAGGAGGAACTAGAGTCAAATAAACAAGAATTCACCTATGCCGAAGTCTTGAGCATTACCAGAAATTTTGAAAGGGTTGTGGGAAAAGGAGGATTTGCTACAGTATACCTTGGCTGGATAGATCAAGATACTGAGGTAGCTGTCAAAATGCTCTCTCCCTCAGCTCAAGGATGTCTGCAATTTCAGGCAGAGGCCAAACTTCTTGCTGTAGTTCATCATAAATTcttgacttctctaataggatattgtgacgatggcgaaaatatggctctcatctatgagtacatggctaatggAGACTTAGCAAAACATTTATCAGGCAAAGCCAAAAATATATTGAGTTGGAACCAACGACTTCAAATTGCAGTGGATACTGCAGAAGGATTGGAGTATCTGCATCATGGCTGCAATCCACCAATTGTTCACAGAGATGTGAAGTCTAAAAACATTTTACTGAATGAAAAATTCCGGGGCAAACTAGCTGATTTTGGGTTGTCAAAGATCTACCCCGATGAAGGTGACACCCATATGACCACAGTGGTAGCTGGTACCCCTGGATATCTTGACCCTGAGTACAATAGATCACATAGGTTGAAGGAAAAAAGTGATGTTTTCAGTTTTGGGATAGTTTTGCTTGAGATAATTACCGGTCAACCTGCCATAACCAAAACTGAAGAGAAAACTCACATAATTCAATGGGTTAGTTCTATATTACTTGAAAGGGAGATGAGTGATATTGTAGATTCAAGATTACGGGGAGAATTTGATATTGATGCCGTAAAGAAGGTCTTAGACACTGCAATGGCATGTGTAGCAACCACTTCCATTAATAGGCCAACCATGAGCCATGTAGTTAATGAACTGAAACAATGTTTGGGTTTGGCAAAGAGGATGAGTCCTCCTCCGTCTGAATCTGACGATCATGAGAGTTCAACGAACAGCTTAATCACTGTCTCCTTTGATGGAATTAGTGGAGAAAGCTCTCTAGAAAGATAG 2655 0.3883 MKGRFLLLMFQLSLTLPIIVHAQNQSAFISIDCGLVDEPSYTDETTSIYYSSDVNFTDSGVSHSISPKYKASLDRQFWKVRSFPDRTRNCYTLVVPQGSDKKYLLRARFAYGNYDGKDFLPEFDIYLGDRWWGSVVFEDVSSVVTKEIIYAASSDYAHVCLFNTHKGTPFISVLELRVLNGDAYLANYLELLARYDVGLHDGEIIRYPDDVYDRMWTPYNSIDWRKIDTTLTIDQDAISYNFLPLPPSVVMETAAIPANVNGDINFRFLPKNNASSSCYVYMYSAEIQKLQATEIREFNIFVDGEILNNAPINPLYLQSVYYAAISSERPLELWINKTSRSTLPPLLNGIEIYMAKNFSQSETYQTDVDGIINVKSIYGIKRNWQGDPCTPRTYLWDGINCSYAESGSPRIIYLNLSSSGLIGNIAHGISNLQSIEYLDLSHNNLTGVVPEFLHQLRFLRVLNLGGNQLSGTIPTQLIVRSKNGLLESDFGGNPNLCAPGSCNKKNGNKVVVSLVASLGGAFIILVITVISLCIYKTRQVSTRRSKQIAYSTIKEELESNKQEFTYAEVLSITRNFERVVGKGGFATVYLGWIDQDTEVAVKMLSPSAQGCLQFQAEAKLLAVVHHKFLTSLIGYCDDGENMALIYEYMANGDLAKHLSGKAKNILSWNQRLQIAVDTAEGLEYLHHGCNPPIVHRDVKSKNILLNEKFRGKLADFGLSKIYPDEGDTHMTTVVAGTPGYLDPEYNRSHRLKEKSDVFSFGIVLLEIITGQPAITKTEEKTHIIQWVSSILLEREMSDIVDSRLRGEFDIDAVKKVLDTAMACVATTSINRPTMSHVVNELKQCLGLAKRMSPPPSESDDHESSTNSLITVSFDGISGESSLER 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00235 884 Pfam Leucine rich repeat 413 469 IPR001611 GO:0005515
Cca10g00235 884 SUPERFAMILY Protein kinase-like (PK-like) 559 859 IPR011009 -
Cca10g00235 884 Gene3D Phosphorylase Kinase; domain 1 547 648 - -
Cca10g00235 884 ProSiteProfiles Protein kinase domain profile. 574 845 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00235 884 SMART serkin_6 574 845 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00235 884 CDD STKc_IRAK 580 843 - -
Cca10g00235 884 Pfam Protein tyrosine and serine/threonine kinase 576 841 IPR001245 GO:0004672|GO:0006468
Cca10g00235 884 ProSitePatterns Serine/Threonine protein kinases active-site signature. 693 705 IPR008271 GO:0004672|GO:0006468
Cca10g00235 884 ProSitePatterns Protein kinases ATP-binding region signature. 580 602 IPR017441 GO:0005524
Cca10g00235 884 PANTHER TYROSINE KINASE FAMILY PROTEIN 10 884 - -
Cca10g00235 884 MobiDBLite consensus disorder prediction 858 884 - -
Cca10g00235 884 Pfam Malectin-like domain 31 354 IPR024788 -
Cca10g00235 884 Gene3D Ribonuclease Inhibitor 372 485 IPR032675 -
Cca10g00235 884 Gene3D Transferase(Phosphotransferase) domain 1 649 860 - -
Cca10g00235 884 PANTHER OS07G0107800 PROTEIN-RELATED 10 884 - -
Cca10g00235 884 MobiDBLite consensus disorder prediction 849 884 - -
Cca10g00235 884 SUPERFAMILY L domain-like 373 477 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00235 Cca-Chr10 2582263 2587176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00235 18 849 Receptor kinase-like Gene Family AT2G19210 46.864 0.0 749
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Cca10g00235 Malectin_like 7.6e-94 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00235 - - gmx:100778537 1469.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00235 10 2582263 2587176 Cca10g00235 10 2582263 2587176 ECH