Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00233 ATGAAGGTCGTATATCTGTCATCATACACAGTGTCCATCACTTTCTTCGTTTCATTTCTCAGTGCTCTACTTATTCAAGCTCAGGATCAATCAGGATTCATCAGCATGGATTGCGGAGCTCCTGCATATGTGAACTATACTGAGTCCAAGACAGGCATAAAATATATTTCAGATGCAAATTTCATAAATACTGGTGTGAGCGGGAATATATTATCTGAACTCAAAAGTAACTATCAACGACAGATGTGGACCGTGAGAAGCTTCCCGGAAGGAAAAAGGAACTGCTACAAAATAAATATCACAAGAGGCTCCAAGTATCTGATTAGGGCTAGTTTCTTGTACGGAAATTATGATGGCCTAAATATGTTACCACAGTTTGATCTTCTTCTTGGGCCTAACCTGTGGGATACAGTGACTATATATATTGCTTCAGAGGACCAAGCCAATGAGATCATATATGTTCCTTCACTGGATTATGTGCAAATCTGTCTGGTTGACACTGGCCATGGGACACCGTTCATATCAGCCATAGAATTCAGGACTTTGATTAATGATGTTTATGTCACTCAATTTGGATCATTGGAAGCTTACTACCGCTTGGATTTAGGTTCAAATAATAGCTACAGGTACAACTATGATGTTTATGATCGTTACTGGAGTACCTATAGTGACGATCATTGGACACCATTAAATGCTTCTATTCCTGTTGATTATTTAAACCAGAACCGGAGCAGTTACAAACTGCCAGCAATTGTCATGAGCACCGCAGTTACACCAGTAAATGCTAGTGATCCATTGGTAATAAGGTGGGAGCCAGATGATGAAACTGAGCAATTCTATGTTTACATGCACTTCACGGAGATTCAAGTGTTGGCAAAGAATGAGATAAGAGAATTCAACATCACTCAGAATGGTGACCCATGGTATCAAAAATTTTCTCCACGGTACAGGGGTGTCAACACTTTATGTAGCGTGTCAGCCATCAGTGGGAAAGAAATTGCATATTCACTTGAGAAGACCAAAAATTCAACCTTGCCTCCTATCATCAACGCTATTGAAATTTACAGAGTAATAGACTTCTCGCAATCAGATACTCACCAAGGAGATGTTGATGCAATTTCAACCATCAAGTCAGTTTATGGTGTGACAAGAGATTGGCAAGGTGATCCATGTGCCCCTGTAGCCTACTCGTGGCATGGTCTGAATTGTTCTTATCCCGGAAATGAGTCCTCAAGAATCACCACTTTGAATTTATCTTCAAGTGAATTGTCCGGAAAGATAGATCCTTCAATCTCGAAGCTCACCATGTTAGAGATTTTGGATTTATCAAACAATAAATTAAACGATGAAGTTCCTGATTTTCTATCTCAACTACAACACTTGAAAATCTTAAACTTGGAGAACAATAACCTCTTCGGTTCAATTCCGTCAGCACTTGTTGAAAAATCTATGGAAGGTTCTCTCTCACTAAGTGTGGGCCAAAATCCATATCTATGTGAATCTGGTCAATGCAATGCCAAGGACGATAAAAAGAACATTGTTACGCCCTTAGTAGCGTCAATTAGTGGGGTCTTGATTCTTCTAGTAACCGTGGCAATTTTGTGGACTCTAAATAAAAGGAGAAAATCAAAAGCTTTGACGGTAGAAAAGAATCAATATCAGATCTCACCACAAAACACAGAACAAGATGATTCATTACTGCAATTCAAAAAGCAAATATATTCATACTCTGATGTCCTGAAAATCACCAGCAATTTCAATACAATTGTTGGTAAAGGAGGGTTTGGAACAGTTTATCTGGGTTATATCGATGAAACTCCTGTTGCAGTGAAAATGCTTTCCCCTTCAGCTGTTCATGGTTATCAACAATTTCAAACAGAGGTTAAACTTCTGATGAGAGTTCATCACAAAAATTTGACCTCCCTTATTGGTTATTGTAATGAAGGAACCAATAAAGGTCTCATATATGAGTACATGGCTAATGGAAACTTACAAGAACATCTTTCTGGTAAATGCAACAAAACAAAATTCTTGAGCTGGGAGGACAGACTTCGTATAGCAGTGGATGCGGCCTCAGGATTGGAGTATCTGCAAAATGGTTGCAAGCCTCCTATATTCCACAGGGACATAAAATCTACAAACATCTTGTTGAATGAACACTTTCAAGCAAAGTTATCTGATTTTGGTCTATCCAAAATTATCCCAACAGAAGGGGGAACTCATGTGTCGACTGTTATTGCTGGTACTCCCGGTTATCTCGACCCTGAGTACTACATAACCAATAGATTAACAGAGAAGAGCGATGTTTATAGCTTCGGTGTTGTTCTTTTGGAGATAATCACAAGTAAACCAGTGATAACAAAGAATCAAGAAAAGACTCATATAAGTCAATGGGTTAGCTCGTTGATTGCGAAAGGTGATATCAAGGCCATTGTTGACTCAAGGTTAGACGGAGACTTCGATAGTAACTCAGTTTGGAAAGTAGTAGAAATAGCAACGTCCTGTGTGTCTCCAAATCCCAACAGAAGGCCAATCATAAGTGTGATAGTGACTGAACTGAAGGAGTCTTTAGCAATGGAATTAGCTCGGACTACGTATAGCATTGCTGATACTAGAGATTCAATTAAAGCGGTCACCAGGACTCTGAATACCGAATTTATTCCTCAGGCCAGGTAA 2676 0.392 MKVVYLSSYTVSITFFVSFLSALLIQAQDQSGFISMDCGAPAYVNYTESKTGIKYISDANFINTGVSGNILSELKSNYQRQMWTVRSFPEGKRNCYKINITRGSKYLIRASFLYGNYDGLNMLPQFDLLLGPNLWDTVTIYIASEDQANEIIYVPSLDYVQICLVDTGHGTPFISAIEFRTLINDVYVTQFGSLEAYYRLDLGSNNSYRYNYDVYDRYWSTYSDDHWTPLNASIPVDYLNQNRSSYKLPAIVMSTAVTPVNASDPLVIRWEPDDETEQFYVYMHFTEIQVLAKNEIREFNITQNGDPWYQKFSPRYRGVNTLCSVSAISGKEIAYSLEKTKNSTLPPIINAIEIYRVIDFSQSDTHQGDVDAISTIKSVYGVTRDWQGDPCAPVAYSWHGLNCSYPGNESSRITTLNLSSSELSGKIDPSISKLTMLEILDLSNNKLNDEVPDFLSQLQHLKILNLENNNLFGSIPSALVEKSMEGSLSLSVGQNPYLCESGQCNAKDDKKNIVTPLVASISGVLILLVTVAILWTLNKRRKSKALTVEKNQYQISPQNTEQDDSLLQFKKQIYSYSDVLKITSNFNTIVGKGGFGTVYLGYIDETPVAVKMLSPSAVHGYQQFQTEVKLLMRVHHKNLTSLIGYCNEGTNKGLIYEYMANGNLQEHLSGKCNKTKFLSWEDRLRIAVDAASGLEYLQNGCKPPIFHRDIKSTNILLNEHFQAKLSDFGLSKIIPTEGGTHVSTVIAGTPGYLDPEYYITNRLTEKSDVYSFGVVLLEIITSKPVITKNQEKTHISQWVSSLIAKGDIKAIVDSRLDGDFDSNSVWKVVEIATSCVSPNPNRRPIISVIVTELKESLAMELARTTYSIADTRDSIKAVTRTLNTEFIPQAR 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00233 891 SUPERFAMILY Protein kinase-like (PK-like) 564 851 IPR011009 -
Cca10g00233 891 Pfam Malectin-like domain 37 357 IPR024788 -
Cca10g00233 891 Pfam Protein tyrosine and serine/threonine kinase 586 853 IPR001245 GO:0004672|GO:0006468
Cca10g00233 891 ProSitePatterns Serine/Threonine protein kinases active-site signature. 705 717 IPR008271 GO:0004672|GO:0006468
Cca10g00233 891 Gene3D Transferase(Phosphotransferase) domain 1 659 876 - -
Cca10g00233 891 CDD STKc_IRAK 590 855 - -
Cca10g00233 891 ProSitePatterns Protein kinases ATP-binding region signature. 590 611 IPR017441 GO:0005524
Cca10g00233 891 ProSiteProfiles Protein kinase domain profile. 584 857 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00233 891 SUPERFAMILY L domain-like 366 479 - -
Cca10g00233 891 PANTHER PUTATIVE-RELATED 20 891 - -
Cca10g00233 891 SMART serkin_6 584 859 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00233 891 PANTHER OS07G0107800 PROTEIN-RELATED 20 891 - -
Cca10g00233 891 Gene3D Phosphorylase Kinase; domain 1 567 658 - -
Cca10g00233 891 Gene3D Ribonuclease Inhibitor 371 492 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00233 Cca-Chr10 2526218 2554283 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00233 19 891 Receptor kinase-like Gene Family AT1G51800 48.646 0.0 848
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Cca10g00233 Malectin_like 3.7e-115 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00233 - - gmx:100785345 1360.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00233 10 2526218 2554283 Cca10g00233 10 2526218 2554283 ECH