Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00230 ATGTTTCCTCATATCTCAAATCCATTTCTCTGCTTCACTCATATACTTTATGGGGTAACAAGAGATTGGCAAGGTAATCCATGCGCCCCTGTAGCCTACTTGTGGCATGGTCTGAATTGTTCTTATCCCATAAATGACTCCCCAAGAATCACAACATTGGATTTATCAAACAATAGCTTAAACGGTAAAGTTCCTGATTTTCTGTCTCAATTACAGTACTTGAAGATCTTAAACTTAGAGAACAATAACCTCTCCGGTTCAATTCCTTCTGCAATTGTTGAAAAATCTAAGGAAGGTTCTCTCTCACTAAGTGTGGGCCAAAATCCGTATCTATGTGAATCTGGTCAATGCGACGAGAACAAGAAAAAGAACATTGTTATGCCCTTAGTAGCATCAGTTTGCGGGGTTTTGATCCTTCTAGTGGCCGTGGCAGCTATATTGTGGACCATTAAACGTAGAAAACGGGAAGGTTGGAATTGGATGGTAGAAAAGGGTCAAAGAGGATTTGGAACAGTTTATATGGGCTATATCGACGAGACTCCAGTTGCAGTGAAAATGCTTTCCCCTTCTTCTGTTCGTGGTTATCAACAATTTCAAGCAGAGGTAAAACTTTTAATGAGAGTTCATCATAAAAATTTGACCTCCCTTGTTGGTTATTGTAACGAAGGAACCGACAAGAGTCTCATATACGAGTTTATGGCTAATGGAAACTTACAAGAACATCTCTGTGGTAAACACAGCAAATCAAAATTCTTGATCTGGGAAGACAGACTTCGTATAGCAGTGGATGCAGCCTTAGGATTGGAGTATTTGCAAACTGGTTGCAAGCCACCTATAATCCACAGAGACGTAAAATCTACAAACATATTGTTGAATGAACACTTCCATGCAAAATTATCTGATTTTGGTCTTTCCAAAATTATCCCAACCGAAGGGGGATCTCATGTGTCAACCGTTGTTGCTGGTACTCCTGGTTACCTGGACCCTCACTACTACGTATCCAATAGATTAACAGAGAAAAGTGATGTTTATAGCTTTGGAGTTGTTCTTTTGGAAATAATCACGGGTCAACAAGTAAAAGCAAGGATTGAAGGAAAGAGTCACATAATTGAATGGGTTAGATCCCTGATTGAGAAAGGGGACATCAAGGGCATAGTTGACTCAAGGTTAGAAGGAGAATTTGACATTAATTCAGCTTGGAAAGCAGTAGAAACAGCAATGGCTTGTGTTTCTCCAAATCCTAACGAAAGACCAATGATGAGTGTGATAGTGGTTGAACTAAAGGAGGCTTTAGCGACAGAATTAGCTCGAACAAATCATAATAGTGGTGGCGATTCAGTTGAACCGGTCAATATGAATCTGAACACTGAACTCGCTCCCCTGGCTAGGTAA 1392 0.4009 MFPHISNPFLCFTHILYGVTRDWQGNPCAPVAYLWHGLNCSYPINDSPRITTLDLSNNSLNGKVPDFLSQLQYLKILNLENNNLSGSIPSAIVEKSKEGSLSLSVGQNPYLCESGQCDENKKKNIVMPLVASVCGVLILLVAVAAILWTIKRRKREGWNWMVEKGQRGFGTVYMGYIDETPVAVKMLSPSSVRGYQQFQAEVKLLMRVHHKNLTSLVGYCNEGTDKSLIYEFMANGNLQEHLCGKHSKSKFLIWEDRLRIAVDAALGLEYLQTGCKPPIIHRDVKSTNILLNEHFHAKLSDFGLSKIIPTEGGSHVSTVVAGTPGYLDPHYYVSNRLTEKSDVYSFGVVLLEIITGQQVKARIEGKSHIIEWVRSLIEKGDIKGIVDSRLEGEFDINSAWKAVETAMACVSPNPNERPMMSVIVVELKEALATELARTNHNSGGDSVEPVNMNLNTELAPLAR 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00230 463 Gene3D Ribonuclease Inhibitor 13 111 IPR032675 -
Cca10g00230 463 PANTHER PUTATIVE-RELATED 165 463 - -
Cca10g00230 463 Pfam Protein tyrosine and serine/threonine kinase 165 426 IPR001245 GO:0004672|GO:0006468
Cca10g00230 463 PANTHER OS07G0107800 PROTEIN-RELATED 165 463 - -
Cca10g00230 463 PANTHER OS07G0107800 PROTEIN-RELATED 17 157 - -
Cca10g00230 463 SUPERFAMILY Protein kinase-like (PK-like) 151 425 IPR011009 -
Cca10g00230 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 279 291 IPR008271 GO:0004672|GO:0006468
Cca10g00230 463 Gene3D Transferase(Phosphotransferase) domain 1 234 448 - -
Cca10g00230 463 PANTHER PUTATIVE-RELATED 17 157 - -
Cca10g00230 463 CDD STKc_IRAK 165 429 - -
Cca10g00230 463 SUPERFAMILY L domain-like 35 92 - -
Cca10g00230 463 SMART serkin_6 160 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00230 463 ProSiteProfiles Protein kinase domain profile. 158 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00230 463 Pfam Leucine Rich Repeat 74 92 IPR001611 GO:0005515
Cca10g00230 463 Gene3D Phosphorylase Kinase; domain 1 165 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00230 Cca-Chr10 2439472 2470078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00230 17 463 Receptor kinase-like Gene Family AT1G51800 46.641 7.29e-153 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Cca10g00230 PK_Tyr_Ser-Thr 3.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00230 - - vun:114185309 677.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00230 10 2439472 2470078 Cca10g00230 10 2439472 2470078 ECH