Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00229 ATGGATGGAAAAAGGAGATGCCATTGGGCTTGGAGCTGCACGCTGTGGTGTATCCTTGCTTATACCATCGCAGAATTTACTGGAAAGTCTATAGTTATGGCCACAGAGAAGAACTCTATGCATCACAAACAAGGAAGAAGGCAACTAGATGATGTAACTGGTTCTATTTGCATTGACTGTGGGATAGCAGAAGACCTTGTCTACACTGATGATAAAACTCAGATTAAGTACACTTCCGATGCACAGTTCATTGGCACTGGAACAAGCAAAAACATAGCCGTCAAGTTCAATTCTGAAACACCCCAAAGAACATTCAAAACTGTGAGAAGCTTTCCTGAGGGGAAAAGGAATTGCTACACCCTGAAACATCCAGAAGGCAGAAATACTATTTACTTGATTAGAGCTTCTTTCATGTATGGGAACTATGATGAGTTGAATCAGCTGCCAAAATTCGATCTCTATATTGGGGTTAATTTATGGGACTCTCTGATGTTTGACAATGCCACTCATGTGGTAATCAAGGAAATTTTACATGTGCCATCCATGGATGAATTATATGTTTGTTTATTGAACACTGATATGGGAACTCCTTTTATATCAGCACTAGAGGTGAGGCATTTTGATCATACCAGTTATAGAACTAAATCCGGACCCTTGGCCCTATATAGACGTTTTGACATTGGCTCAACAACCAATGAAATAGTGAGGTTTGACAATGATGTTTATGATCGAATGTGGTATCCTTACAACTTACCTGATGCAACACCACTCAATACTTCATTACCCGTTGACTCCTTGATCCATACTGCATATCATCTACCACCAACAGTGATGAAAACTGCTGTGAGGCCGACAAATGAAAATGATTCCCTGGAATTTGAATTTGACACCGGATATCCTACTTCAGAGTCCTATATTTACATGCACTTTGCTGAAACCGAATTGCTTAAGGAAAACGAAAGCAGGGTATTCGACATTACATTGAATGGGAAAATATGGGCTGAATCTGTAACTCCAACGTATTTGCAATCAACTACAATAGAGACAAATCAGTCCATTAGGGGAAGGAAGCTCATGTTCTCTATGCACAAGAAACCATATTCCACTCATCCTCCCATTCTAAATGCAATGGAGATTTACGTTGTTAAAGAATTCTTGCATTCACCTACAGACCAAGAAGATGTTAAGGCTATCATGTTCATCAAATCACATTACAAGTTGTCATCGTCATTGGGTAAATCCTGGCAAGGAGATCCTTGTGCACCATTGAAATACTCTTGGAATGGTCTCAACTGTAGCGATAATGGATATCATTCACCCACAATTACTGCATTAAATCTAGCCTCGAGTGGATTAGGTGGCACAATAATTGCATCTTTTTTGGAGCTCAAATTCTTAGAGTCCTTGGATTTATCAAACAATAAATTAACAGGACCACTACCTGATTTTTCACAACTGCAATACTTAAAGACTCTCAATTTATCAGGGAACAGACTCTCAGGTGAAATTCCTTCACTTCTCAAGGAAAGAAAAAATAATGGTTCACTTTTGTTGAGTGTGGATGGAAATCCGGATCTCTGCCTGGTAGGCCCATGTGAAGAGGACAAAAAGAACATTGTCCCACTTGTTGCAGGGATTCTTTCATTGGCAGTCCTTTTCATTGTATTGGGTATTGTACTGACTATCATTTGGAGAAAGAGATCCAACAGAAAACCAGCGTCAAAGCTAGCTGCGAGTTCAAATGAAGAAGTTGTGCTGAAGACAAACAATGAACAGTTCACGTACTCTCAGATATTGACTATTACCAATAACTTCGACAAAATGATTGGGAAGGGAGGATGTGGAATTGTTTATCATGGTTCCTTAAAGGATGGCACACAAGTTGCTGTCAAAATGGTCTTGCAAAAATCTTCTCAAGCATCTCAGCAGTTTCAGACTGAGGCTCAACTCTTAATGCGTGTGCATCACAAGAACTTAGCTTCCTTTCTTGGATACTGTAATGAAGTTGGACATACAGCCATCATTTATGAATACATGGCTTATGGGAACTTAGAGGAGTATCTTTCAGATGCAAGGAGAGAACCATTGAGTTGGAGAGAGAGGATTCAGATAGCAGTTGATGCTGCTCAAGGTATTGAGTACTTGCATCATGGCTGCAAGCCGCCAATAATCCATAGAGACATTAAGAGTGCAAACATTTTACTGAATGAGAAATTGCAAGCAAAAGTAGCTGATTTTGGTTTCTCAAAAGATTTCACAACTGAAAATGAAAGTCATGTATCAACTGCAGTTATTGGAACATTTGGATATCTTGATCCAGAATACTACGTATCCAGCAGGCTAACTGAGAAAAGCGACGTTTATAGTTTTGGCATTGTGCTTTTGGAGCTAATTACTGGACAGCCAGCTATAATAAGGGGTCATCAGAACATTCACATTGTGCAATGGATTAGCAACTTTCTTGCAAGAGGAGATATCCAACAAATTGTTGATCCAAGGATGCAGGGAGATTTTGACTTTGGTTCTATGTGGAAGGCTGTGGAGGCAGCAATAGCTTGTGTGCCTTCAATGTCTATCCAAAGGCCATCAATGAGTTACATTGTCGGTGAACTGAAAGAGTCCTTAAAAATGGAAGCAGCTCGAGAACAAGAAGGCATCAATTCGATTGAAATGAATGTTATTGATCTTGAAGCTGATTGTGGCCCGGATGCAAGATAG 2718 0.3977 MDGKRRCHWAWSCTLWCILAYTIAEFTGKSIVMATEKNSMHHKQGRRQLDDVTGSICIDCGIAEDLVYTDDKTQIKYTSDAQFIGTGTSKNIAVKFNSETPQRTFKTVRSFPEGKRNCYTLKHPEGRNTIYLIRASFMYGNYDELNQLPKFDLYIGVNLWDSLMFDNATHVVIKEILHVPSMDELYVCLLNTDMGTPFISALEVRHFDHTSYRTKSGPLALYRRFDIGSTTNEIVRFDNDVYDRMWYPYNLPDATPLNTSLPVDSLIHTAYHLPPTVMKTAVRPTNENDSLEFEFDTGYPTSESYIYMHFAETELLKENESRVFDITLNGKIWAESVTPTYLQSTTIETNQSIRGRKLMFSMHKKPYSTHPPILNAMEIYVVKEFLHSPTDQEDVKAIMFIKSHYKLSSSLGKSWQGDPCAPLKYSWNGLNCSDNGYHSPTITALNLASSGLGGTIIASFLELKFLESLDLSNNKLTGPLPDFSQLQYLKTLNLSGNRLSGEIPSLLKERKNNGSLLLSVDGNPDLCLVGPCEEDKKNIVPLVAGILSLAVLFIVLGIVLTIIWRKRSNRKPASKLAASSNEEVVLKTNNEQFTYSQILTITNNFDKMIGKGGCGIVYHGSLKDGTQVAVKMVLQKSSQASQQFQTEAQLLMRVHHKNLASFLGYCNEVGHTAIIYEYMAYGNLEEYLSDARREPLSWRERIQIAVDAAQGIEYLHHGCKPPIIHRDIKSANILLNEKLQAKVADFGFSKDFTTENESHVSTAVIGTFGYLDPEYYVSSRLTEKSDVYSFGIVLLELITGQPAIIRGHQNIHIVQWISNFLARGDIQQIVDPRMQGDFDFGSMWKAVEAAIACVPSMSIQRPSMSYIVGELKESLKMEAAREQEGINSIEMNVIDLEADCGPDAR 905
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00229 905 ProSiteProfiles Protein kinase domain profile. 603 905 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00229 905 ProSiteProfiles Leucine-rich repeat profile. 465 487 IPR001611 GO:0005515
Cca10g00229 905 ProSitePatterns Serine/Threonine protein kinases active-site signature. 723 735 IPR008271 GO:0004672|GO:0006468
Cca10g00229 905 Pfam Malectin-like domain 58 381 IPR024788 -
Cca10g00229 905 Gene3D Phosphorylase Kinase; domain 1 585 678 - -
Cca10g00229 905 Pfam Protein tyrosine and serine/threonine kinase 605 817 IPR001245 GO:0004672|GO:0006468
Cca10g00229 905 PANTHER KINASE-TRANSFORMING PROTEIN RAF, PUTATIVE-RELATED 26 905 - -
Cca10g00229 905 SUPERFAMILY L domain-like 395 512 - -
Cca10g00229 905 Gene3D Ribonuclease Inhibitor 393 519 IPR032675 -
Cca10g00229 905 Gene3D Transferase(Phosphotransferase) domain 1 679 898 - -
Cca10g00229 905 SMART serkin_6 603 867 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00229 905 PANTHER OS07G0107800 PROTEIN-RELATED 26 905 - -
Cca10g00229 905 Pfam Leucine rich repeat 441 499 IPR001611 GO:0005515
Cca10g00229 905 PRINTS Leucine-rich repeat signature 466 479 - -
Cca10g00229 905 PRINTS Leucine-rich repeat signature 486 499 - -
Cca10g00229 905 SUPERFAMILY Protein kinase-like (PK-like) 586 869 IPR011009 -
Cca10g00229 905 ProSiteProfiles Leucine-rich repeat profile. 488 510 IPR001611 GO:0005515
Cca10g00229 905 CDD STKc_IRAK 609 873 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00229 Cca-Chr10 2423552 2429730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00229 51 905 Receptor kinase-like Gene Family AT2G19210 47.636 0.0 812
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Cca10g00229 Malectin_like 7.3e-108 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00229 - - gmx:100791717 1612.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00229 10 2423552 2429730 Cca10g00229 10 2423552 2429730 ECH