Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00228 ATGCATATCCATAGCACAGAAGCCCTAGTTGTGTTCTTTGTATTTGTCTTCTTTGCATGGGGGAATGCACAAAACACCCTTGTGCCAGCAATCATAACATTTGGTGACTCAGCCGTGGATGTGGGGAATAATGACTATCTACCCACCCTTTTCAAGGCTAACTACCCTCCTTATGGAAGGGACTTTGTCAACCATAAACCCACTGGGAGGTTCTGCAATGGGAAGTTAGCTACTGATATCACTGCTGAAACTTTGGGTTTTAAGAGTTATGCACCTGCATATCTTAGCCCTCAAGCATCAGGGAAGAATCTTCTTATTGGAGCAAACTTTGCTTCGGCTGCCTCTGGTTATGATGAAAAGGCTGCTATTTTGAATCATGCGATTCCATTGTCCCAACAGTTAAAATTTTACAAAGAATACCAAGGCAAGCTGGCCAAGGTAGCTGGCAGTAAAAAAGCAGCATTGGTTATTAAGGATGCATTGTACTTATTGAGTGCTGGCAGTAGTGACTTTGTGCAAAACTATTACGTCAATCCTTTGATCAATAAAGTCTTGACTCCTGATCAGTATTCTGCATATCTTGTGGGTGCATTTTCAAGCTTTGTTAAGGACTTGTATAGATTGGGAGCTAGGAAAGTTGGAGTGACTTCACTCCCACCTCTGGGTTGCCTACCTGCTGCAAGAACTTTGTTTGGTTTCCATGAGAATGGTTGTGTCTCGAGGACCAACAATGACGCCCAAGGATTTAACAAGAAACTCAAGTCAGCTGCAGCAAATCTCCAAAAGCAACATCCTGGTCTTAAGATTGTTGTCTTTGATATTTTCAAACCTCTTTATGACCTTGTTCAGTCCCCTCCAAAATTTGGCTTTGCGGAGGCAAGGAGAGGTTGCTGTGGTACAGGGATAGTGGAGACGACATCTTTATTGTGCAATCCAAAATCACCAGGAACTTGTTCTAATGCAACACAATATGTGTTTTGGGACAGCGTCCATCCTTCACAAGCTGCTAACCAAGTTTTAGCCGATGCATTGATTCTACAAGGCATAGCCCTTATCACTTAA 1062 0.4275 MHIHSTEALVVFFVFVFFAWGNAQNTLVPAIITFGDSAVDVGNNDYLPTLFKANYPPYGRDFVNHKPTGRFCNGKLATDITAETLGFKSYAPAYLSPQASGKNLLIGANFASAASGYDEKAAILNHAIPLSQQLKFYKEYQGKLAKVAGSKKAALVIKDALYLLSAGSSDFVQNYYVNPLINKVLTPDQYSAYLVGAFSSFVKDLYRLGARKVGVTSLPPLGCLPAARTLFGFHENGCVSRTNNDAQGFNKKLKSAAANLQKQHPGLKIVVFDIFKPLYDLVQSPPKFGFAEARRGCCGTGIVETTSLLCNPKSPGTCSNATQYVFWDSVHPSQAANQVLADALILQGIALIT 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00228 353 SUPERFAMILY SGNH hydrolase 31 344 - -
Cca10g00228 353 CDD SGNH_plant_lipase_like 29 345 IPR035669 -
Cca10g00228 353 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 2 352 - -
Cca10g00228 353 Pfam GDSL-like Lipase/Acylhydrolase 31 343 IPR001087 GO:0016788
Cca10g00228 353 Gene3D SGNH hydrolase 20 348 IPR036514 -
Cca10g00228 353 PANTHER GDSL ESTERASE/LIPASE EXL3 2 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00228 Cca-Chr10 2421292 2423162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00228 5 345 Pollen Coat Proteome AT1G75910 34.593 1.21e-62 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00228 - - gmx:100795716 660.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00228 10 2421292 2423162 Cca10g00228 10 2421292 2423162 ECH
Cca10g00228 10 2421292 2423162 Cca11g00277 11 3457405 3459534 PCT