Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00223 ATGGGAAAGGCTTCGAGGTGGTTGAAAGGGTTGTTGGGATTAAAGAAAGAGAGGGAGTACAGTGGCAATTCGGGGTCATTGACTCATGACAAGAGGGAAGAGAAAAGATCAGGGAAGGATGGAGTGAGTCACATTGCTCCAACCAGTGTTGCTGCTTTTCATCGTGCTCGTAGATCCTATGTTGCTGAAGATGGTGTCAAGAACAAGCTTGCAATTGATGTGCCTATTGTGAGGTCAAGAAGCTGTGACAGAGGCACCTTGCTTATTGGAAGCAGGGAGGGCTGGGCTGCTCTCAAGATTCAATCTTTTTTTAGAGGTTATTTGGCGCGAAAGGCTCTTAGAGCACTGAAAGGATTGGTTAAGATACAAGCTCTTGTTAGAGGCTATCTAATTCGGAAAAGGGTTGCTGCAACTTTTCACAGTGTGCAAGCTATGATAAGAGCTCAAGCTGTGGCTCGATCAGTGCGAGCTCGACGTTCAATTGACAAGGAAAATAGACTTCATCCAGAAACTCCTTCAAGGAAATATATGCAACGGTTTGATGAAACAAGAAATGGGTTTCACGGTAGAAGGGTACCCATATGCTGTAAGGCACCCTTGTGTGAATTTGATGAGATTCCTAAAGTTGTTGAGGTTGACACACACATGCCCCATTCAAGATGTAGGAACCTTAACATTAACACAATGTCTGAATGTGGAGAAGATCTTAATTATCAAGCAATATCATCCTCTCTTCATTGTCCAATTCAAAGTCGAATCTCACCTTATGGAAACCGGCACCCTCAAGAGTTTGAATGGTTATTCAACGTTGATGAAAGTCAGAAGTTCTCCACAGCACACAACACGCCTCGTTTGGGAAAATGTATGTTAGCTAATAGCACAAATAATCCAATGAAGAGTGTTTGTGGAGACACCTTCTTTAGGCCTTGTTCCAATTCCCCTAACTACATGGCCAATACTCACTCTTCTAAGGCAAAATTAAGGTCTCATAGTGCTCCAAAGCAAAGGCCTGAACTCAAGAAAAGGCTTTCAATTAGTGAAATTATGGCAGCAAGAAATAGTGTTAGTGGGGCTAGGATGCAGTGGCCATCCAACCCAAATACTCAAGATTACTGTTTTTTTTTTAACAACATTTAA 1137 0.4239 MGKASRWLKGLLGLKKEREYSGNSGSLTHDKREEKRSGKDGVSHIAPTSVAAFHRARRSYVAEDGVKNKLAIDVPIVRSRSCDRGTLLIGSREGWAALKIQSFFRGYLARKALRALKGLVKIQALVRGYLIRKRVAATFHSVQAMIRAQAVARSVRARRSIDKENRLHPETPSRKYMQRFDETRNGFHGRRVPICCKAPLCEFDEIPKVVEVDTHMPHSRCRNLNINTMSECGEDLNYQAISSSLHCPIQSRISPYGNRHPQEFEWLFNVDESQKFSTAHNTPRLGKCMLANSTNNPMKSVCGDTFFRPCSNSPNYMANTHSSKAKLRSHSAPKQRPELKKRLSISEIMAARNSVSGARMQWPSNPNTQDYCFFFNNI 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00223 378 Gene3D - 94 136 - -
Cca10g00223 378 ProSiteProfiles IQ motif profile. 117 144 IPR000048 GO:0005515
Cca10g00223 378 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 377 - -
Cca10g00223 378 Pfam IQ calmodulin-binding motif 95 114 IPR000048 GO:0005515
Cca10g00223 378 Pfam IQ calmodulin-binding motif 120 134 IPR000048 GO:0005515
Cca10g00223 378 MobiDBLite consensus disorder prediction 22 41 - -
Cca10g00223 378 ProSiteProfiles IQ motif profile. 96 121 IPR000048 GO:0005515
Cca10g00223 378 PANTHER IQ-DOMAIN 5-RELATED 1 377 - -
Cca10g00223 378 MobiDBLite consensus disorder prediction 22 42 - -
Cca10g00223 378 SMART iq_5 115 136 IPR000048 GO:0005515
Cca10g00223 378 SMART iq_5 92 114 IPR000048 GO:0005515
Cca10g00223 378 Pfam Protein of unknown function (DUF4005) 273 356 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00223 Cca-Chr10 2374193 2376259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00223 1 360 IQD Protein Family AT3G16490 42.821 1.73e-78 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00223 - - gmx:100806729 520.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00223 10 2374193 2376259 Cca10g00223 10 2374193 2376259 ECH
Cca10g00223 10 2374193 2376259 Cca11g00266 11 3311765 3314037 PCT