Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00222 ATGGCAGTGAGCTTAAAAGGCTGTTACACCGTGAAGCCTTGGGAGAAAACATGGTGCGGACGCTTAGCTTTATCCGAATTGGATCAAACAGGACAAGTAACCCACGTTCCCACACTCTACTTCTACCACCCCCCAGAAAACTGCATGTACTCCACCATTGCTTCCACCTTGAGAGACTCACTGAGCCGAGTCCTGGTGCCGTTTTATACCCTAGCCGGTCGTTTACACTGGATAAACAACGGTCGTTTAGAGCTCCATTGCAACgcctcggggcgatgcttgaagctttgctttgatttgtctatatga 309 0.4239 MAVSLKGCYTVKPWEKTWCGRLALSELDQTGQVTHVPTLYFYHPPENCMYSTIASTLRDSLSRVLVPFYTLAGRLHWINNGRLELHCNASGRCLKLCFDLSI 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00222 102 PANTHER SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE 5 92 - -
Cca10g00222 102 Pfam Transferase family 2 91 - -
Cca10g00222 102 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 5 92 - -
Cca10g00222 102 Gene3D - 1 95 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00222 Cca-Chr10 2365827 2366135 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00222 1 91 Monolignol Biosynthesis Gene Families AT5G48930 32.967 1.02e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00222 K13065 - ccaj:109814883 177.948