Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00221 ATGATGGATGAAAGGTCAAGAAGCGAGGCATCTCCTCAACTGTTGGATTTGATGAACAGAAGCGAAGGAAAGTGTTCAGAGGAGAGAAAGCTTGAACTGAGGCTAGGTCCACCCGGTGGTGAAGAATGGTCTCACAGTGGTAAAATGAAGAAAAGCAACACAGAAAGAGAAGAGTCTCTACTCTCTCTTGGATGCTTCTCTCATGCAATACTAAATGGTTTCCAAAGCAAGGATACCACCCCTCCATGGCCAAGCTACCACAACAAAGCTTCTTCGTTTCTTCAGTTCCCATCAACCCCACCTGTGATGGGAAAGGAAGCATTAGCTTCACAGGCCTGTTGCCCTAAGGTGGTAGAGTTGCAGAATAATGATACAAAAGTGTTCTCTCCCTCTTCTGCAAATACAGCTGTGTCACAACCCAACACCTCTCAGAAAAGAACTGCTCCTGCTCCAGTGGTGGGGTGGCCCCCAATTCGTTCCTTCAGGAAGAACCTTGCAAGCAGTTCTAACTCTAAGCCACCTCCTGAGTCATCACAGCACAACGAGGTTGCTGGTAAAAAACCTGTTGACAACTATGGTAAAGGCTTGTTTGTCAAGATCAACATGGATGGAGTTCCAATAGGGAGGAAAGTGGACCTCAATGCTTACGACAGCTATGAAAATCTCTCTTCTGCCGTGGACGAGCTATTCAGAGGCCTTCTTGCTGCTCAAAGAGATTCCTCTGCTGGTGGAGCTCACAACAAGGTGGAGGAAGAGAAAGCGATTACGGGTTTATTGGATGGAAAAGGGGAGTATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCACATGTTTGTATCAACAGTGAAGAGGCTACGTGTGTTGAAGAGTTCTGAGCTTTCTGCTTTTACCCTTGGCAGTAAGCAAGAGAAGATAGCACTTGATTCGGCAATGAAATGA 966 0.4627 MMDERSRSEASPQLLDLMNRSEGKCSEERKLELRLGPPGGEEWSHSGKMKKSNTEREESLLSLGCFSHAILNGFQSKDTTPPWPSYHNKASSFLQFPSTPPVMGKEALASQACCPKVVELQNNDTKVFSPSSANTAVSQPNTSQKRTAPAPVVGWPPIRSFRKNLASSSNSKPPPESSQHNEVAGKKPVDNYGKGLFVKINMDGVPIGRKVDLNAYDSYENLSSAVDELFRGLLAAQRDSSAGGAHNKVEEEKAITGLLDGKGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSAFTLGSKQEKIALDSAMK 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00221 321 MobiDBLite consensus disorder prediction 129 148 - -
Cca10g00221 321 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 21 312 IPR003311 GO:0005634|GO:0006355
Cca10g00221 321 MobiDBLite consensus disorder prediction 162 178 - -
Cca10g00221 321 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 21 312 - -
Cca10g00221 321 Gene3D - 190 310 - -
Cca10g00221 321 MobiDBLite consensus disorder prediction 21 36 - -
Cca10g00221 321 MobiDBLite consensus disorder prediction 129 188 - -
Cca10g00221 321 ProSiteProfiles PB1 domain profile. 195 299 IPR000270 GO:0005515
Cca10g00221 321 MobiDBLite consensus disorder prediction 1 55 - -
Cca10g00221 321 Pfam AUX/IAA family 31 304 IPR033389 -
Cca10g00221 321 SUPERFAMILY CAD & PB1 domains 191 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00221 Cca-Chr10 2342194 2346338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00221 199 310 B3 DNA Binding Superfamily AT4G23980 33.929 1.25e-14 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Cca10g00221 AUX_IAA 5.9e-73 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00221 K14484 - gmx:100799244 473.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00264 11 3258464 3263509 Cca10g00221 10 2342194 2346338 ECH
Cca10g00221 10 2342194 2346338 Cca10g00221 10 2342194 2346338 ECH
Cca10g00221 10 2342194 2346338 Cca11g00264 11 3258464 3263509 PCT