Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00220 ATGAATCTTATACAAAAAACCCGTTTGAAGTTGCTACTACACTTAAACATCTTTCTGCTTTGTCTTTACTGCACAAGTTCATATCCCACACCCATGAAATGTACAGACACAAGCCGTGTTTGCACTTCTTTCTTAGCCTTCAAGCCTCGACCAAACCAGACTTTGGCTATGATACAAAGCATGTTTGACGTGCTGCCAGATGAGGTCACTGTTGAAGGCAATGGCTGGGAATATATATTCATCAGGAAAAACTGTTCTTGTGCTGCTGGTATGAAGAAGTATGTGTCTAACACCACTCTCACTGTGAAATCCAATGGAGGGTTTGTGCATGATTTGGTAATGGAAGCCTATGATGGGCTTGCTCTCTTGCCAAACACCACTCGTTGGGTTAGAAAAGGTGGTGTCATATCACTGAGCTTGTTCTGTAGCTGCTCCAGTGGACTTTGGAACTATTTGATGAGCTATGTCATCAGAGATGGTGATAGTGTTGAGTCACTAGCAAGCCGGTTTGGGGTTAGTATGGATAGCATTGAGACAGTGAATGCCATTGACAATGCTGATACCCTCGCTGTTGGCTCTCTCTATTATATACCTTTGAATTCGGTTCCTGGTGAGCTTTACCACTTGAAGAATGACACTCCTCCAGCTCCAACCCCTTCCCCATCTGTTGATAATTTTTCAGCTGACCAAATCAACCATAAGGCTCGTGTATCCCATGAATGGATCGTTGGAGGTTTAGGGGTTGGTCTTGCTCTGATAATGTTAAGCATTATCCTATGTGTGGCCCTGAGATCACCCAATTGTTTGATTGAAGCCAGAAATAAGGCAAAAGATTCTGAAGGAAAGATCTCTAATAAGTTTTATGTTTTTGGGAATCCAAATTTGTTTTGTGGATGTGGCAAATCTGTGGACCAGAAGCAAACTGACGGTGAATCCAGTAGTCACCAAATTACCAAAGCATCAACCTTAATACCTGACATATTGGACATGGACAAGCCTGTAGTTTTTTCACATGAAGAGATTTTTTCCTCGACTGATGGTTTCTCTGATTCAAATCTACTTGGGCATAGAAAATATGGTTCAGTTTACTATGGCCTCCTTCGTGACCAGGAAGTTGCTATTAAAAGAATGACAGGTGCTAAAACTAAAGAGTTCACATCAGAAATGAAAGTTCTGTGCAAGGTTCATCATGCTAATCTGGTAGAATTTATCGGCTATGCGGCTAGTCATGATGAGTTTTTCCTTATTTATGAATATGCTCAGAAGGGTTCACTCAGCAGTCATTTGCATGATCCTCAAAATAATGGTCATTCACCACTTTCTTGGATCACAAGGGTCCAAGTTGCACTTGATGCTGCTAGGGGCCTTGAATACATACATGAGCATACAAAAACTCGTTACGTCCATCAAGACATTAAGACAAGCAACATTTTACTCGATGCTTCCTTTAGAGCCAAGATATCAGATTTTGGGTTAGCGAAACTTGTATGTAAAACAAATGCGGGAGAAACCACAGCAACCAAAGTTGTAAATGCATATGGATATCTAGCTCCAGAATACTTGAGCAATGGCTTAGCAACGACCAAAAGTGATGTCTACGCATTTGGTGTTGTTCTTTTTGAGATTATATCAGGGAAGGAGGCTATTATTCAAACACAAGGTCCTGAAAAACGATCATTGGCATCTATTATGTTGGCAGTTCTCAGGAACTCACCCGAGTCCGTGAGCCTGTCAAGCACGAGAAACCTCGTTGACCCTATTATGATGGATCTGTATCCCCATGATTGTGTATTTAAGATGGCTATGTTGGCAAAGCAATGTGTGGATGAGGATCCCGTATTACGCCCTGATATGAAGCAAGTTGTGATTTCCCTCTCACAAATCATGCTTTCTTCTGTTGAGTGGGAAGCGACTCTAGCTGGAAACAGCCAGGTATTCAGTGGGCTTGTTCAGGGAAGATAG 1962 0.4185 MNLIQKTRLKLLLHLNIFLLCLYCTSSYPTPMKCTDTSRVCTSFLAFKPRPNQTLAMIQSMFDVLPDEVTVEGNGWEYIFIRKNCSCAAGMKKYVSNTTLTVKSNGGFVHDLVMEAYDGLALLPNTTRWVRKGGVISLSLFCSCSSGLWNYLMSYVIRDGDSVESLASRFGVSMDSIETVNAIDNADTLAVGSLYYIPLNSVPGELYHLKNDTPPAPTPSPSVDNFSADQINHKARVSHEWIVGGLGVGLALIMLSIILCVALRSPNCLIEARNKAKDSEGKISNKFYVFGNPNLFCGCGKSVDQKQTDGESSSHQITKASTLIPDILDMDKPVVFSHEEIFSSTDGFSDSNLLGHRKYGSVYYGLLRDQEVAIKRMTGAKTKEFTSEMKVLCKVHHANLVEFIGYAASHDEFFLIYEYAQKGSLSSHLHDPQNNGHSPLSWITRVQVALDAARGLEYIHEHTKTRYVHQDIKTSNILLDASFRAKISDFGLAKLVCKTNAGETTATKVVNAYGYLAPEYLSNGLATTKSDVYAFGVVLFEIISGKEAIIQTQGPEKRSLASIMLAVLRNSPESVSLSSTRNLVDPIMMDLYPHDCVFKMAMLAKQCVDEDPVLRPDMKQVVISLSQIMLSSVEWEATLAGNSQVFSGLVQGR 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00220 653 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 32 653 IPR044812 GO:0019199|GO:0045087
Cca10g00220 653 Gene3D Phosphorylase Kinase; domain 1 324 419 - -
Cca10g00220 653 Gene3D Transferase(Phosphotransferase) domain 1 421 641 - -
Cca10g00220 653 ProSiteProfiles Protein kinase domain profile. 348 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00220 653 PANTHER BNAA06G02020D PROTEIN 32 653 - -
Cca10g00220 653 Pfam LysM domain 155 193 IPR018392 -
Cca10g00220 653 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
Cca10g00220 653 ProSiteProfiles LysM domain profile. 153 197 IPR018392 -
Cca10g00220 653 Pfam Protein tyrosine and serine/threonine kinase 353 623 IPR001245 GO:0004672|GO:0006468
Cca10g00220 653 SMART LysM_2 154 198 IPR018392 -
Cca10g00220 653 Gene3D LysM domain 150 204 IPR036779 -
Cca10g00220 653 CDD LysM 154 197 IPR018392 -
Cca10g00220 653 SUPERFAMILY Protein kinase-like (PK-like) 326 625 IPR011009 -
Cca10g00220 653 SUPERFAMILY LysM domain 153 198 IPR036779 -
Cca10g00220 653 SMART serkin_6 348 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00220 Cca-Chr10 2313958 2318790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00220 31 653 Receptor kinase-like Gene Family AT1G51940 62.559 0.0 755
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Cca10g00220 PK_Tyr_Ser-Thr 2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00220 - - gmx:100781752 1136.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00220 10 2313958 2318790 Cca10g00220 10 2313958 2318790 ECH
Cca10g00220 10 2313958 2318790 Cca11g00263 11 3220812 3228982 PCT