Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00216 ATGACTCGGCGGTGCTCTCACTGCAGCAACAACGGGCACAACTCCCGCACCTGCCCGTCGCGTGGGAGCAGCGGCGTCAAGCTCTTCGGCGTTAGGCTCACCGATGGATCAATCATTAAGAAGAGCGCCAGCATGGGAAATCTCAACCACCTCCATTCCCTCGCCTCCTCTCCCAATCCAAGCTCTCCCTCCTCCGACCCGCCGCACGATTACTTGTCCGATGACCCCGCCCATGCCTCCACCTTCGCTAACCGCCGCGCTCAAAGAAAAAAAGGTGTTCCATGGACTGAAGAAGAACATCGGTTGTTCCTAATTGGTCTCCAGAAGCTGGGCAAAGGAGACTGGCGTGGGATAGCGCGTAATTTTGTTGTATCAAGGACTCCTACTCAGGTAGCAAGTCATGCCCAGAAGTATTTTATCCGGCAGAGTCATGCTACCAGGAGAAAGAGACGTTCCAGCCTTTTTGACATGGTTCCAGATGTGTCTTCAGATCCACCTTCAGTGCCAGAAGAACAAGTACTGCTTCCACCTTCCGAGAACTCACAACCAAGCAATGGGAAATCACAACCTTCATTGAATCTCTCCCTCAAATCAGAATTTGAACCCATGGAAACTACTTCTCAAGAAAATGTGGAAGAGACCAATGAAACTATGGTGGGATCAAACGGACTGACACCAATGGCTCCTCCATTCTTCCCTGCTTATTTACCTGTTCCATTTCCCATGTGGCCATCGACTGCGGCTTCCTTTGAAGAAGTTAAGGGAGGAGAGACATCCCATCATCAGGTCCACAGGCCAATCCCAGTCATTCCCAAGGAACCTGTCAATGTTGACGAACTAGTGGGAATGTCTCATCTTAGCATTGGGGAATCACAGGTACGTGATAGAGAGCCTTCCCCACTATCCTTAAAGTTGTTAGGAGAGCCCTCAAGGCAGTCAGCATTCCATGCAAATACTCCAGTTAGTGGTTCGGAGTTAAACAGGGGCAAGAACAGTGCAATTCAAGCGGTTTGA 1014 0.5039 MTRRCSHCSNNGHNSRTCPSRGSSGVKLFGVRLTDGSIIKKSASMGNLNHLHSLASSPNPSSPSSDPPHDYLSDDPAHASTFANRRAQRKKGVPWTEEEHRLFLIGLQKLGKGDWRGIARNFVVSRTPTQVASHAQKYFIRQSHATRRKRRSSLFDMVPDVSSDPPSVPEEQVLLPPSENSQPSNGKSQPSLNLSLKSEFEPMETTSQENVEETNETMVGSNGLTPMAPPFFPAYLPVPFPMWPSTAASFEEVKGGETSHHQVHRPIPVIPKEPVNVDELVGMSHLSIGESQVRDREPSPLSLKLLGEPSRQSAFHANTPVSGSELNRGKNSAIQAV 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00216 337 MobiDBLite consensus disorder prediction 157 193 - -
Cca10g00216 337 MobiDBLite consensus disorder prediction 312 337 - -
Cca10g00216 337 MobiDBLite consensus disorder prediction 50 77 - -
Cca10g00216 337 Gene3D - 93 144 - -
Cca10g00216 337 Pfam Myb-like DNA-binding domain 94 139 IPR001005 -
Cca10g00216 337 SMART sant 91 141 IPR001005 -
Cca10g00216 337 ProSiteProfiles SANT domain profile. 95 143 IPR017884 -
Cca10g00216 337 SUPERFAMILY Homeodomain-like 88 143 IPR009057 -
Cca10g00216 337 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 90 142 IPR006447 GO:0003677
Cca10g00216 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 143 IPR017930 -
Cca10g00216 337 CDD SANT 94 139 IPR001005 -
Cca10g00216 337 ProSiteProfiles Myb-like domain profile. 87 139 IPR001005 -
Cca10g00216 337 MobiDBLite consensus disorder prediction 308 337 - -
Cca10g00216 337 PANTHER OS01G0187900 PROTEIN 1 331 - -
Cca10g00216 337 MobiDBLite consensus disorder prediction 1 22 - -
Cca10g00216 337 MobiDBLite consensus disorder prediction 174 193 - -
Cca10g00216 337 PANTHER TRANSCRIPTION FACTOR KUA1 1 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00216 Cca-Chr10 2282108 2285190 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca10g00216 Myb_DNA-binding 7.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00216 - - gmx:778036 565.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00216 10 2282108 2285190 Cca10g00216 10 2282108 2285190 ECH