Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00210 ATGGCAATGTCCTGCAAGGATGGTAAACATGGATTGGATAACGGGAAATATGTCCGTTACACGCCTGAGCAGGTTGAGGCCCTTGAGAGGCTTTATCATGACTGCCCCAAACCCAGTTCCATTCGCCGCCAGCAGCTCATTCGCGAGTGCCCTATTCTCTCCAACATTGAGCCTAAGCAAATCAAAGTTTGGTTTCAGAACAGAAGGTGTAGAGAGAAGCAGAGGAAAGAGGCTTCGCGGCTGCAAGCTGTGAATAGGAAGCTCACGGCTATGAACAAGCTTCTCATGGAGGAGAATGATAGGTTGCAGAAGCAGGTGTCTCAATTGGTCTATGAAAATGGATACTTTCGTCAACATACCCAAAATACTGCGCTTCCAACCAAAGACACAAGCTGTGAGTCGGCGGTGACTAGTGGTCAACGCAGTTTGACAACCCAGCATCCCCCAAGGGATGCAAGTCCTGCAGGGCTTATGTCCATTGCAGAAGAGACTTTAGCAGAGTTTCTTTCAAAGGCTACTGGAACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGTGTGGCAGCAAGAGCCTGCGGCCTAGTGGGTCTAGAACCCACAAGGGTTGCAGAGATCCTCAAAGATCGGCCTTCGTGGTTTCGTGATTGCCGAGCTGTTGATGTTCTGAATGTGCTGCCCACAGCAAATGGTGGAACCATAGAGCTGCTTTATATGCAGCTATATGCACCAACCACATTGGCACCTGCTCGTGACTTCTGGTTGTTGCGCTACACATCTGTTTTAGAAGATGGAAGCTTAGTGATCTGTGAGAGGTCTCTTAAAAATACACAAAATGGTCCAAGCATGCCTCCTGTGCAACATTTTGTCCGAGCAGAGATGCTTCCTAGTGGGTACCTGATAAGACCTTGTGAAGGAGGTGGTTCCATCATCCACATTGTTGATCATATGGATTTGGAGCCATGGAGTGTTCCTGAAGTACTGCGGCCACTGTATGAATCATCAACAGTGCTGGCTCAGAAGACAACAATGGTGGCCCTACGTCAACTAAGGCAGATTTCACATGAAGTTTCTCAGTCTAATGTTACTGGGTGGGGGAGACGACCAGCAGCTCTTCGAGCACTTGGCCAAAGACTCAGCCGTGGTTTCAATGAGGCGATCAATGGGTTCACTGATGAGGGATGGTCAATGATTGGCAATGATGGTGTTGATGATGTTACAGTTCTAGTGAATTCAGCACCTGACAAGTTAATGGGTCTGAATCTTTCCTTTGCCAATGGATTTCCAGCTGTCAGTAATGCAGTCTTGTGTGCCAAAGCTTCAATGCTATTACAGAATGTGCCTCCAGCCATTCTTCTAAGGTTCCTACGGGAGCATAGATCAGAATGGGCAGACAACAACATGGATGCTTACTCAGCTGCTGCTATTAAAGTTGGTCCCTGTGGTTTACCAGGATCTCGGGTTGGAAATTATGGGGGTCAAGTTATTCTTCCTCTAGCCCACACCATTGAGCATGAAGAGTTTCTGGAAGTTATTAAATTAGAAGGAATTGCTAGTTCTCCTGAAGAGACAATAATGCCCAGAGAAGTGTTTCTTTTGCAACTCTGCAGTGGAATGGATGAAAATGCTGTTGGAACCTGTGCTGAACTTATATTTGCTCCAATTGATGCATCCTTTGCTGATGATGCCCCTCTTCTGCCTTCTGGATTTCGCATCATTCCTCTTGATTCTGGAAAGGAAGCATCAAACCCAAATCGGACCCTTGACCTGGCATCTGCCCTAGATGTTGGCCCCACTGGAAACAGAGCATCAAATGATTATTCTGGAAATTCTGGATGTATGAGATCTGTGATGACAATAgcatttgaatttgcatttgaaagtcatatgcaAGAACATGTAGCATCTATGGCACGACAGTATGTTCGCAGCATTATATCATCTGTTCAAAGGGTAGCGTTAGCACTTTCACCTTCTCATTTGAGTTCACAAGCTGGGCTTAGAACACCACTGGGTACTCCTGAAGCACAAACACTTGCTCGCTGGATCTGCAATAGTTATAGGTGCTACTTGGGTGTCGAGCTACTTAAATCTAATAATGAGGGGAACGAATCTTTGCTCAAGTCCTTGTGGCATCACTCAGATGCAATATTGTGCTGCACTCTTAAGGCATTGCCAGTGTTCACTTTTGCCAACCAGGCAGGTCTTGACATGCTGGAGACCACCTTAGTTGCTTTGCAAGATATAACGTTGGAGAAAATATTTGATGATCATGGCCGAAAGATTCTGTGCTCAGAGTTTCCCCAGATTATTCAGCAGGGTTTTGCATGCCTTCAAGGTGGTATTTGTCTCTCAAGCATGGGGAGACCCATCTCATATGAAAGAGTAGTGGCTTGGAAGGTGCTGAATGAAGATGAGAATGCTCATTGTATTTGCTTTATGTTTATGAACTGGTCTTTTGTTTGA 2514 0.4551 MAMSCKDGKHGLDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQNTALPTKDTSCESAVTSGQRSLTTQHPPRDASPAGLMSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDRPSWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPSMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMVALRQLRQISHEVSQSNVTGWGRRPAALRALGQRLSRGFNEAINGFTDEGWSMIGNDGVDDVTVLVNSAPDKLMGLNLSFANGFPAVSNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYSAAAIKVGPCGLPGSRVGNYGGQVILPLAHTIEHEEFLEVIKLEGIASSPEETIMPREVFLLQLCSGMDENAVGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSGKEASNPNRTLDLASALDVGPTGNRASNDYSGNSGCMRSVMTIAFEFAFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLSSQAGLRTPLGTPEAQTLARWICNSYRCYLGVELLKSNNEGNESLLKSLWHHSDAILCCTLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKILCSEFPQIIQQGFACLQGGICLSSMGRPISYERVVAWKVLNEDENAHCICFMFMNWSFV 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00210 837 Gene3D - 10 82 - -
Cca10g00210 837 PANTHER CLASS III HD-ZIP PROTEIN CNA1 1 837 - -
Cca10g00210 837 SUPERFAMILY Bet v1-like 159 348 - -
Cca10g00210 837 SUPERFAMILY Homeodomain-like 14 79 IPR009057 -
Cca10g00210 837 Coils Coil 71 112 - -
Cca10g00210 837 Pfam Homeodomain 16 74 IPR001356 GO:0003677
Cca10g00210 837 Pfam START domain 160 368 IPR002913 GO:0008289
Cca10g00210 837 ProSiteProfiles 'Homeobox' domain profile. 11 75 IPR001356 GO:0003677
Cca10g00210 837 Gene3D - 194 372 IPR023393 -
Cca10g00210 837 ProSiteProfiles START domain profile. 150 365 IPR002913 GO:0008289
Cca10g00210 837 Pfam MEKHLA domain 694 836 IPR013978 -
Cca10g00210 837 SMART HOX_1 13 79 IPR001356 GO:0003677
Cca10g00210 837 MobiDBLite consensus disorder prediction 126 149 - -
Cca10g00210 837 CDD START_ArGLABRA2_like 154 369 - -
Cca10g00210 837 CDD homeodomain 16 76 IPR001356 GO:0003677
Cca10g00210 837 MobiDBLite consensus disorder prediction 126 154 - -
Cca10g00210 837 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 837 IPR044830 GO:0003700
Cca10g00210 837 CDD bZIP 68 107 - -
Cca10g00210 837 SMART START_1 159 369 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00210 Cca-Chr10 2205556 2212475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00210 1 789 Homeobox Transcription Factor Family AT1G52150 86.490 0.0 1427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca10g00210 START 1.7e-53 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00210 K09338 - zju:107428556 1603.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00210 10 2205556 2212475 Cca10g00210 10 2205556 2212475 ECH
Cca10g00210 10 2205556 2212475 Cca11g00250 11 3043152 3050896 PCT