Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00203 ATGACCCGAGCAACATGTCACGAAACTCCTagcagcagcagcagcagcagcagcagcaACAACAACTCCACTTCAAAACCCGAGAAAACTAAAGAAACAGAGACCTcaaaacaaagcaaggcaaagagaaacagagagcagagcaagcaCCCGGTTTACCACGGCGTGCGAATGCGCAATTGGGGCAAATGGGTGTCCGAAATTCGCGAGCCTCGCAAGAAATCACGAATCTGGCTCGGCACTTTCGCCACGCCCCAAATGGCGGCACGTGCGCACGATGTTGCGGCTCTGAGCATAAAAGGCCACGCCGCCATTCTCAACTTCCCCCACTTAGCCAACATGCTTCCGAGACCCCTCACGTGCGCCCCGCGTGACGTCCAAgccgccgccgccgaagccgccgccATGGTGGAGTTCGACCGCGAGGGCTCGGAGTCGGACTCGGAAGAGCTGAGTCAGATTGTGGAACTGCCCAACATCGAAGAGAGGTTGGACTCGGTTGAGTCGAGAAGTGAGTTCGCTTTTGTTGACTCGGTGGATAGTTGGGTGTTTCCTCCTCCAATGAGCATTTGTGAGATGATGTTTGGAGAAGCTAGTTTTATCTTGGAAACCTCTCACTATCTTTGGGACTGA 633 0.4534 MTRATCHETPSSSSSSSSSNNNSTSKPEKTKETETSKQSKAKRNREQSKHPVYHGVRMRNWGKWVSEIREPRKKSRIWLGTFATPQMAARAHDVAALSIKGHAAILNFPHLANMLPRPLTCAPRDVQAAAAEAAAMVEFDREGSESDSEELSQIVELPNIEERLDSVESRSEFAFVDSVDSWVFPPPMSICEMMFGEASFILETSHYLWD 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00203 210 Pfam AP2 domain 51 102 IPR001471 GO:0003700|GO:0006355
Cca10g00203 210 SMART rav1_2 52 115 IPR001471 GO:0003700|GO:0006355
Cca10g00203 210 PRINTS Ethylene responsive element binding protein signature 53 64 IPR001471 GO:0003700|GO:0006355
Cca10g00203 210 PRINTS Ethylene responsive element binding protein signature 75 91 IPR001471 GO:0003700|GO:0006355
Cca10g00203 210 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 198 - -
Cca10g00203 210 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 14 198 - -
Cca10g00203 210 MobiDBLite consensus disorder prediction 1 26 - -
Cca10g00203 210 SUPERFAMILY DNA-binding domain 52 110 IPR016177 GO:0003677
Cca10g00203 210 MobiDBLite consensus disorder prediction 1 53 - -
Cca10g00203 210 MobiDBLite consensus disorder prediction 27 53 - -
Cca10g00203 210 ProSiteProfiles AP2/ERF domain profile. 52 109 IPR001471 GO:0003700|GO:0006355
Cca10g00203 210 CDD AP2 53 111 IPR001471 GO:0003700|GO:0006355
Cca10g00203 210 Gene3D AP2/ERF domain 52 110 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00203 Cca-Chr10 2147694 2148533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00203 20 187 AP2-EREBP Transcription Factor Family AT5G11590 53.093 8.75e-62 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca10g00203 AP2 1.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00203 K09286 - gmx:100784419 285.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00203 10 2147694 2148533 Cca10g00203 10 2147694 2148533 ECH