Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00200 ATGGCTGGCATAGCATTCGGACGTTTCGATGATTCTTTCAGTTTGAGCTCCATCAAGGCCTATATTGCTGAGTTCATCTCAACCTTGCTCTTTGTTTTTGCTGGTGTTGGTTCAGCCATAGCCTATGCTAAGTTGACATCAGATGCAGCTCTTGATCCTGCTGGGTTGGTAGCTGTTGCTATTTGCCACGGTTTTGCTCTCTTCGTCGCTGTTTCTGTCGGAGCCAACATTTCTGGTGGCCACGTCAACCCTGCTGTGACCTTTGGCTTGGCTCTTGGGGGCCAAATCACCATCCTCACTGGTATCTTCTACGTGATTGCACAGCTTCTTGGCTCCATAGTTGCATGCTTACTCCTCAAGTTTATCACTGGTTTTACTACTCCTATCCACAGTgttgctgctggagttggagctggtgaaggagttgTTACAGAGATTATCATCACATTTGGATTAGTATACACTGTGTATGCCACAGCAGCTGACCCCAAAAAGGGTTCATTGGGAACAATTGCACCCATTGCCATAGGTTTCATTGTTGGTGCGAACATCTTAGCAGCAGGACCATTCTCTGGCGGATCAATGAACCCTGCACGCTCCTTTGGCCCTGCAGTGGTTAGTGGTGACTTCCATGACAACTGGATCTACTGGGTTGGACCTCTTGTTGGTGGTGGCTTGGCTGGTCTTATCTACACCTATGCCTTCATCCCTACCCAGCATGCACCTCTTGCCACTGAATTTTGA 744 0.4583 MAGIAFGRFDDSFSLSSIKAYIAEFISTLLFVFAGVGSAIAYAKLTSDAALDPAGLVAVAICHGFALFVAVSVGANISGGHVNPAVTFGLALGGQITILTGIFYVIAQLLGSIVACLLLKFITGFTTPIHSVAAGVGAGEGVVTEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFHDNWIYWVGPLVGGGLAGLIYTYAFIPTQHAPLATEF 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00200 247 Pfam Major intrinsic protein 14 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca10g00200 247 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca10g00200 247 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca10g00200 247 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca10g00200 247 PRINTS Major intrinsic protein family signature 144 162 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca10g00200 247 PRINTS Major intrinsic protein family signature 177 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca10g00200 247 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca10g00200 247 PANTHER AQUAPORIN-8 1 247 IPR034294 -
Cca10g00200 247 Gene3D Glycerol uptake facilitator protein. 2 245 IPR023271 -
Cca10g00200 247 PANTHER MIP PROTEIN 1 247 - -
Cca10g00200 247 SUPERFAMILY Aquaporin-like 13 242 IPR023271 -
Cca10g00200 247 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Cca10g00200 247 CDD MIP 19 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca10g00200 247 TIGRFAM MIP: MIP family channel proteins 23 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00200 Cca-Chr10 2120985 2123078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00200 1 245 Major Intrinsic Protein MIP AT3G16240 79.352 9.54e-137 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00200 K09873 - gmx:100817754 442.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00200 10 2120985 2123078 Cca10g00200 10 2120985 2123078 ECH