Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00194 ATGTCGAGATCTTTGAAACATGATTACATAGGGTTGGCAGAGAATCCGTCAATGGATGGAAGCTCTGACAAACTGTCTTCTTCTGAAGATGGTAAAACCTTGAAGGAGACAGAGCTGAGGCTTGGCCTCCCTGGTAGCGAGAGAAAATCAGGTGGTGGAGGAGTGTGTCTTTTTGGGAAGGAGTTGCATAATGTTTTGAAGGCTGGGGCTAAGAGGGGCTTCTCTGATGCTATTGTCACTGATGGATCTCAAGGACAAGGACCTTCTTTCTTCTCTCCCAATGTTGACAAAACTCTTGTTGCTTTAGACACTCAAACTAACACCAACAAAGACCTTGCCAAACCGGTTCAGGAAAAGAATGATCAGGTTGCTGCAACAAATGGCCATGCCACTGCTCCTGCTGCTAAAGCACAGGTTGTGGGATGGCCACCAATTCGATCTTTCCGAAAGAACACGATGGCCTCTAATTTGACAAAGAACAATGAAGAAGCTGAGGGAAAACCTGGGTTTGGTTGTCTTTATGTGAAAGTCAGTATGGATGGTGCCCCTTATCTTAGAAAGGTTGATCTCAAAACCTATTACAACTATATGGAGCTTTCTTCAGCTCTTGAGAAGATGTTCAGCTGCTTCACCATTGGTCAATGCAATTCTCCTGGACTTCCTGGGAAAGATGGACTAAGTGAGAGCTCTTTGAGGGATCTTCTCCACGGATCTGAGTATGTTCTTACATATGAAGATAAAGATGGAGATTGGATGCTTGTGGGTGATGTTCCATGGGAAATGTTCACTGATTCATGTCGGAGACTAAGGATAATGAAAGGCTCTGAAGCAATTGGGCTAGCTCCAAGAGCCATGGAAAAATGTAGAAGCCAAAACTAA 879 0.4425 MSRSLKHDYIGLAENPSMDGSSDKLSSSEDGKTLKETELRLGLPGSERKSGGGGVCLFGKELHNVLKAGAKRGFSDAIVTDGSQGQGPSFFSPNVDKTLVALDTQTNTNKDLAKPVQEKNDQVAATNGHATAPAAKAQVVGWPPIRSFRKNTMASNLTKNNEEAEGKPGFGCLYVKVSMDGAPYLRKVDLKTYYNYMELSSALEKMFSCFTIGQCNSPGLPGKDGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSEAIGLAPRAMEKCRSQN 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00194 292 MobiDBLite consensus disorder prediction 25 43 - -
Cca10g00194 292 Gene3D - 169 285 - -
Cca10g00194 292 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 5 284 IPR003311 GO:0005634|GO:0006355
Cca10g00194 292 SUPERFAMILY CAD & PB1 domains 172 273 - -
Cca10g00194 292 Pfam AUX/IAA family 36 283 IPR033389 -
Cca10g00194 292 PANTHER AUXIN-RESPONSIVE PROTEIN 5 284 - -
Cca10g00194 292 MobiDBLite consensus disorder prediction 1 50 - -
Cca10g00194 292 ProSiteProfiles PB1 domain profile. 172 274 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00194 Cca-Chr10 2079074 2081840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00194 174 286 B3 DNA Binding Superfamily AT1G19850 32.174 6.63e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Cca10g00194 AUX_IAA 1.7e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00194 K14484 - gmx:100804423 459.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00194 10 2079074 2081840 Cca10g00194 10 2079074 2081840 ECH