Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00193 ATGATGGCTGGCAACCCTAACTGGTGGAGCATGCATCCACCACCTTTGATCCCACCCCAATACGTGCTTCCTCCTTCTTCAATTCCTTTTAATTCTTTGACTGAAAATCCTGAGCCTCCTCAGTCATGGAGCCAACTGCTTTCTACTGGATTACCGGGAGAAGAAGAGAAACTTGGTTTCAGTCATTTTCAGCCGAAAAACTGGGATGTTCAGTTTCTTAATACTGCTTCTAGAGTTCCTATTCTTGATGTAATAAAGCAAGAAGTTTCTCAAAGGGGCAATTTGTACGACCATGGACTTGAGGAGTTTCAGGCTTCTGGACCAGCTGGCTCATCTTGGTCACACATGGTGCCAGTTTCTTCTCCGGGGTCTTGTGTCACTAGCTTGAGTAGTAATAATATATTGGATTTCACTTATAACAAGTCAGATCATAGGAACAATCTACTACAAGACCAAATATCTGAGTGTAATAGCACAGCCACAGTTGCAGTTTGGAAGAAGGCTAGGGTTCAGCCATCTTCAAGCCAAGCACCTCTCAAGGTGCGGAAGGAGAAGCTAGGAGATAGAATAACAGCACTTCACCAGCTAGTTTCTCCGTTTGGAAAGACTGACACAGCTTCTGTGTTGTTAGAAGCCATTGGATATATAAGGTTCCTGCAGGGTCAAATTGAGGCACTCAGCTCTCCTTACTTGGACAATGCATCAAATTCAAAAAACATGAGGAATCAACAGTCTGTACATGGAGAAAGAAATTCTGTTTTTCCAGAGGACCCGGGTCAGCTGTTGAATGACAATAATGGCCTGAAAAGAAAGGGAGCTCCAAACCAGGATGCAGAAGAAAAACCAAAGGACTTGAAGAGTAGAGGGTTGTGCTTGGTCCCAGTGTCTTGTACCCAACACGTTGGAAGCGAAAATGGGGCCGATTACTGGCCACCTGCATACGGCAGAGGATTTTAA 957 0.4451 MMAGNPNWWSMHPPPLIPPQYVLPPSSIPFNSLTENPEPPQSWSQLLSTGLPGEEEKLGFSHFQPKNWDVQFLNTASRVPILDVIKQEVSQRGNLYDHGLEEFQASGPAGSSWSHMVPVSSPGSCVTSLSSNNILDFTYNKSDHRNNLLQDQISECNSTATVAVWKKARVQPSSSQAPLKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQGQIEALSSPYLDNASNSKNMRNQQSVHGERNSVFPEDPGQLLNDNNGLKRKGAPNQDAEEKPKDLKSRGLCLVPVSCTQHVGSENGADYWPPAYGRGF 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00193 318 MobiDBLite consensus disorder prediction 230 285 - -
Cca10g00193 318 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 19 305 - -
Cca10g00193 318 MobiDBLite consensus disorder prediction 230 250 - -
Cca10g00193 318 CDD bHLH_AtbHLH_like 180 227 IPR045239 -
Cca10g00193 318 Gene3D - 180 246 IPR036638 GO:0046983
Cca10g00193 318 PANTHER OS05G0228400 PROTEIN 19 305 - -
Cca10g00193 318 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 180 230 IPR036638 GO:0046983
Cca10g00193 318 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 170 219 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00193 Cca-Chr10 2054868 2057964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00193 1 261 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 38.922 6.66e-43 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00193 - - gmx:100783401 491.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00193 10 2054868 2057964 Cca10g00193 10 2054868 2057964 ECH