Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00188 ATGGGCGCTGACATGTCCAACAACAACAACCCACCTCCCACTTCTCACGCCAAAGACTTCTTCGCCTCCCCAGCTCTCTCTCTCAGCCTCGCTGGGATTTTTCGCCATGCTGGGGTGGCGCCGCCGCACGAGGCCACCACCTCCAACATGGAGGTCGAGGATGGTGAAGAGGGGAGTGGTGGAGGTGAGAGGTTACTGGAGGAGATTAGCAGCGAGAACTCGGGTCCCACGAGATCCAGATCAGAGGATGATTTCgaaggagaagctgaacatgacgatgatgatgctgatgctgacaagaacaagaagaagaagaggaagaaATATCACAGGCACACTGCTGACCAGATCAGAGAAATGGAAGCGCTTTTCAAAGAGTCACCACATCCTGATGAAAAGCAGAGGCAACAACTAAGCAAGCAATTAGGCCTTGCCCCTAGGCAAGTCAAGTTTTGGTTCCAAAATCGTCGAACCCAAATCAAGGCAATACAAGAGCGTCATGAAAATTCTTTGTTGAAGTCAGAAATAGAGAAACTAAAGGAGAAAAATAAGACCTTACGAGAGACCATAAACAAAGCTTGTTGCCCCCACTGTGGCGTGCCCACCACAAGCAGAGATGGTGCCATGCCAACCGAAGAACAACAACTACGTATTGAAAATGCCAAACTAAAAGCTGAGGTTGAGAAGCTCCGAGCAGCTTTAGGGAAATACGCACCAGGGACAACGTCCCCTTCATGTTCTTCTGGCCATGACCAAGAGAATAGAAGCTCTTTGGATTTTTACACTGGAATTTTTGGACTTGATAAGTCAAGGATAATGGATGTAGTAAACCAAGCAATGGAGGAGCTCATTAAGATGGCTACCGTGGGGGAACCATTGTGGCTTCGTAGCTTTGAGACAGGTCGTGAAATACTTAACTATGATGAATATGTGAAGGAATTCGCAGTTGAAAATTCAAGCAGTGGAAAGCCAAAGAGATCCATTGAAGCCTCAAGAGACACTGGAGTTGTTTTTGTGGATCTCCCTCGCCTTGTGCAAAGTTTTCTAGATGTGAACCAATGGAAGGAAATGTTTCCGTGTTTGATATCTAAGGCAGCAACTGTCGATGTTATATGCAATGGAGAAGGTCCTAACAGGAATGGTGCAGTGCAACTGATGTTTGCTGAGGTGCAAATGCTGACTCCGATGGTGCCCACAAGAGAAGTCTATTTTGTCCGTTTCTGCAAACAGTTGAGTGCGGAACAGTGGGCAATCGTTGATGTATCCATAGACAAAGTAGAAGACAACATTGATGCGTCCCTCGTGAAATGCAGAAAACGCCCATCCGGTTGCATTATCGAGGACAAGTCCAATGGCCATTGCAAAGTAATCTGGGTGGAGCACTTGGAATGCCAGAAGAGTGCAGTCCATTCAATGTATCGCACCATTGTGAACAGTGGCCTAGCCTTTGGGGCTAGGCATTGGATTGCAACACTACAACTTCAATGTGAACGTCTAGTTTTCTTCATGGCAACTAATGTTCCCATGAAGGATTCAACCGGTGTTGCCACATTGGCTGGAAGAAAAAGCATTTTGAAGTTGGCACAGAGAATGACGTGGAGTTTCTGCCATGCAATTGGTGCCTCAAGCTTCCACACATGGACTAAGGTTACAAGCAAAACTGGGGAAGACATAAGGATAAGTTCTAGAAAGAACTTGAACGATCCTGGTGAACCTCTTGGCCTAATATTGTGCGCAGTTTGTTCTGTGTGGTTGCCTGTCGCTCCTAATGTTCTGTTTGATTTCTTGAGGGACGAAGCACGCCGAACCGAGTGGGATATAATGTCAAGTGGTGGGACAGTGCAGTCCATTGCAAATTTAGCCAAAGGACAAGACCGAGGCAATGCCGTATCCATTCAAACAATTAAATCGAATGAAAACAGTGTGTGGATACTACAAGATAGCTGCACAAATCCTTATGAGTCAATGGTGGTATATGCTTCTGTGGACATTACTGGTATTCAGTCTGTGATGACAGGATGTGATTCAAGCAATCTTGCTATTCTGCCCTCGGGATTCTCTATTATTCCTGATGGCCTCGAGTCAAGGCCATTGGTGATTACTTCAAGGCAGGAAGAAAAAAATACTGAGGGAGGATCTTTGTTTACAATGGCATTTCAGATTCTTACCAATGCTTCTCCCACAGCCAAGTTAACTATGGAATCTGTGGACTCGGTCAACACTCTTGTATCTTGTACATTGAGAAATATCAGAACAAGTTTACAATGCGAAGATGGTTAG 2280 0.4434 MGADMSNNNNPPPTSHAKDFFASPALSLSLAGIFRHAGVAPPHEATTSNMEVEDGEEGSGGGERLLEEISSENSGPTRSRSEDDFEGEAEHDDDDADADKNKKKKRKKYHRHTADQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKSEIEKLKEKNKTLRETINKACCPHCGVPTTSRDGAMPTEEQQLRIENAKLKAEVEKLRAALGKYAPGTTSPSCSSGHDQENRSSLDFYTGIFGLDKSRIMDVVNQAMEELIKMATVGEPLWLRSFETGREILNYDEYVKEFAVENSSSGKPKRSIEASRDTGVVFVDLPRLVQSFLDVNQWKEMFPCLISKAATVDVICNGEGPNRNGAVQLMFAEVQMLTPMVPTREVYFVRFCKQLSAEQWAIVDVSIDKVEDNIDASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQKSAVHSMYRTIVNSGLAFGARHWIATLQLQCERLVFFMATNVPMKDSTGVATLAGRKSILKLAQRMTWSFCHAIGASSFHTWTKVTSKTGEDIRISSRKNLNDPGEPLGLILCAVCSVWLPVAPNVLFDFLRDEARRTEWDIMSSGGTVQSIANLAKGQDRGNAVSIQTIKSNENSVWILQDSCTNPYESMVVYASVDITGIQSVMTGCDSSNLAILPSGFSIIPDGLESRPLVITSRQEEKNTEGGSLFTMAFQILTNASPTAKLTMESVDSVNTLVSCTLRNIRTSLQCEDG 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00188 759 Pfam Homeodomain 106 161 IPR001356 GO:0003677
Cca10g00188 759 MobiDBLite consensus disorder prediction 39 116 - -
Cca10g00188 759 MobiDBLite consensus disorder prediction 1 20 - -
Cca10g00188 759 ProSitePatterns 'Homeobox' domain signature. 138 161 IPR017970 GO:0000981|GO:0006355
Cca10g00188 759 Coils Coil 162 192 - -
Cca10g00188 759 CDD START_ArGLABRA2_like 269 497 - -
Cca10g00188 759 Gene3D - 310 493 IPR023393 -
Cca10g00188 759 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN GLABRA 2 20 756 - -
Cca10g00188 759 MobiDBLite consensus disorder prediction 1 16 - -
Cca10g00188 759 SUPERFAMILY Homeodomain-like 95 164 IPR009057 -
Cca10g00188 759 SMART HOX_1 105 167 IPR001356 GO:0003677
Cca10g00188 759 SMART START_1 274 498 IPR002913 GO:0008289
Cca10g00188 759 Gene3D - 91 176 - -
Cca10g00188 759 SUPERFAMILY Bet v1-like 528 744 - -
Cca10g00188 759 SUPERFAMILY Bet v1-like 267 498 - -
Cca10g00188 759 CDD homeodomain 110 161 IPR001356 GO:0003677
Cca10g00188 759 ProSiteProfiles 'Homeobox' domain profile. 103 163 IPR001356 GO:0003677
Cca10g00188 759 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 20 756 IPR042160 -
Cca10g00188 759 Pfam START domain 276 498 IPR002913 GO:0008289
Cca10g00188 759 ProSiteProfiles START domain profile. 265 501 IPR002913 GO:0008289
Cca10g00188 759 Coils Coil 213 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00188 Cca-Chr10 1987945 1993935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00188 69 758 Homeobox Transcription Factor Family AT1G79840 67.521 0.0 946
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca10g00188 START 2.6e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00188 K09338 - gmx:100809926 1371.68