Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00176 ATGGAATTTTGGCCAGAATTTCTTGCGAGCAGCACCGGTAAAGAGTTTGTTGCAGGAGGGTTTGGAGGCACTGCTGGCATAATCTCTGGTTACCCATTAGACACGCTGCGTGTGATGCAACAGAACTCCAACAATGGCTCTGCCTTCACCATCCTTAGAAATCTCCTCGCCaaacaaggaccaactgctctctaccgtggcatggctgcacctttagccTCTGTTACCTTTCAGAACGCAATGGTTTTCCAAATTTACGCAGTTCTGTCGAGGGCATTTAGCTCGTCCGTTTCAATTAACGAGCCTCCTTCCTACAAGGGTGTGGCGTTAGGAGGATTTTGTAGCGGCGCTTTGCAGAGCATGTTGCTCTCCCCTGTGGAGTTAGTGAAGATTCGCCTTCAGCTGCACAAGCACAACACAAGAGAACCGCAAAAGGGTCCCATAAGGGTGGCCAAAAACATATGGAAAAAAGAGGGTCTGCGTGGCATTTACCGAGGGCTTGGCATCACCATGCTACGTGATGCACCGGCACATGGCTTATACTTTTGGACATACGAATACGCTAGGGAGAAGCTTCACCCTGGTTGCAGAACAAGTTGTGAAGAGAGGTTGAATACTATGCTGCTTTCAGGAGGACTGGCCGGGGTTGTGAGCTGGGTTTTCAGCTACCCTTTGGACGTTGTAAAGACGAGAGGAAGGGTACGTTGTGCTGTGGCGGGGCTTGGGAACTGCGGTTGCAAGAGCCTTTGTGGTCAACGGTGCTATCTTTTCGGCTTATGA 780 0.4705 MEFWPEFLASSTGKEFVAGGFGGTAGIISGYPLDTLRVMQQNSNNGSAFTILRNLLAKQGPTALYRGMAAPLASVTFQNAMVFQIYAVLSRAFSSSVSINEPPSYKGVALGGFCSGALQSMLLSPVELVKIRLQLHKHNTREPQKGPIRVAKNIWKKEGLRGIYRGLGITMLRDAPAHGLYFWTYEYAREKLHPGCRTSCEERLNTMLLSGGLAGVVSWVFSYPLDVVKTRGRVRCAVAGLGNCGCKSLCGQRCYLFGL 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00176 259 SUPERFAMILY Mitochondrial carrier 12 237 IPR023395 -
Cca10g00176 259 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 1 235 - -
Cca10g00176 259 Gene3D Mitochondrial carrier domain 10 249 IPR023395 -
Cca10g00176 259 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 92 IPR018108 -
Cca10g00176 259 Pfam Mitochondrial carrier protein 11 95 IPR018108 -
Cca10g00176 259 Pfam Mitochondrial carrier protein 109 192 IPR018108 -
Cca10g00176 259 Pfam Mitochondrial carrier protein 207 231 IPR018108 -
Cca10g00176 259 ProSiteProfiles Solute carrier (Solcar) repeat profile. 103 191 IPR018108 -
Cca10g00176 259 PANTHER CARNITINE/ACYLCARNITINE CARRIER-LIKE PROTEIN 1 235 - -
Cca10g00176 259 PRINTS Mitochondrial carrier protein signature 28 42 IPR002067 GO:0055085
Cca10g00176 259 PRINTS Mitochondrial carrier protein signature 211 233 IPR002067 GO:0055085
Cca10g00176 259 PRINTS Mitochondrial carrier protein signature 164 182 IPR002067 GO:0055085
Cca10g00176 259 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00176 Cca-Chr10 1904516 1906827 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00176 1 249 Antiporters AT1G79900 67.331 3.12e-110 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00176 K15109 - gmx:100801221 421.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00176 10 1904516 1906827 Cca10g00176 10 1904516 1906827 ECH