Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00165 ATGCCCAAAAGGCTTCGAGATTACTTCTTCAAAATAAAGAGCCCTCGTCCTCGCCCTCAAATCCAACTACCCTCTTCTAAGAGCTGGAATATTCTCTCTGGCTGCAAGAATCCTAGGACACCTTCCTTTGCCATATACAGTGGCAGAAACGAACGTGAACGTGAACGTGAACATGTTCATGTTCATGTTCATGTTTCCGACAACGACGACAACAACATCATCAAGGACGATGCAGCCACCTTAGCAGACATTGACCGTTTTCTTTTGGAGAATTTCAGGTCCCTCTACCTTAAAGACGACGAAGAAACCGAAGACACCAAACGGGTCTTGGAAGAGGAAGGTCCAAAGCAAGGTTCGATTTTGTACGATGAGTCATGCTTGGAAACGCCACGTCACATTGGAGGGTCCACCAGATTGTTGGTGAAGAGAGGGTTCTCAGGGTCACTGGCAGAGGACAACACATTAACAAGTGGATCCAACTCAACTATATCGACCCAAGTTTCTTCGTCTTGGAATAGTTGTGAGAAGGATCAAGCTCTTCCGGATAATAGCATCGCTCTCTTGACGCACTCCACCAACCCCTGCCACGACTTCAGGCGCTCCATGCAGGAAATGGTCAACCACCATGGAAGCCTCGTTGATTGGGATTTCATGGAGGACCTCTTGTTCTGTTATCTAAACCTCAATCACAAGAACTCCCACAAGTTCATTCTCAGTGCTTTCGTCGATCTCATCACCGTCATGCGTCGGAACTCTCAACCAACGCCGCATAGCGTTCGAACCATTAGGTCCCGAGAAATTATTAGATAG 810 0.4728 MPKRLRDYFFKIKSPRPRPQIQLPSSKSWNILSGCKNPRTPSFAIYSGRNEREREREHVHVHVHVSDNDDNNIIKDDAATLADIDRFLLENFRSLYLKDDEETEDTKRVLEEEGPKQGSILYDESCLETPRHIGGSTRLLVKRGFSGSLAEDNTLTSGSNSTISTQVSSSWNSCEKDQALPDNSIALLTHSTNPCHDFRRSMQEMVNHHGSLVDWDFMEDLLFCYLNLNHKNSHKFILSAFVDLITVMRRNSQPTPHSVRTIRSREIIR 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00165 269 ProSiteProfiles OVATE domain profile. 187 247 IPR006458 -
Cca10g00165 269 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 185 247 IPR006458 -
Cca10g00165 269 Pfam Transcriptional repressor, ovate 191 246 IPR006458 -
Cca10g00165 269 PANTHER TRANSCRIPTION REPRESSOR OFP14 3 258 - -
Cca10g00165 269 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 3 258 IPR038933 GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00165 Cca-Chr10 1804287 1805557 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Cca10g00165 Ovate 5.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00165 - - ccaj:109815237 501.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00165 10 1804287 1805557 Cca10g00165 10 1804287 1805557 ECH
Cca10g00165 10 1804287 1805557 Cca11g00206 11 2558950 2560118 PCT