Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00163 ATGAGCGTGGTTGGTTTTGATTTTGGTAACGAGAGCTGCATTGTTGCTGTTGCGAGGCAAAGGGGGATTGATGTCGTGCTCAATGATGAGTCCAAGCGTGAAACTCCTGCAGTTGTATGCTTTGGTGACAAACAACGGTTCCTTGGGACAGCTGGGGCTTCGTCTACTATGATGAACCCAAAGAACTCGATCTCACAGATAAAGAGGTTAATTGGTAGACAATTTGCTGATCCTGAATTACAGCGAGATCTGAAGTCATTGCCTTTTGTTGTAACTGAAGGACCCGATGGATATCCATTAATTCATGCCCGGTACTTGGGTGAAACTAAAACATTTACACCTACCCAAGTATTCGGAATGATGCTATCAAACCTTAAAGAAATAGCTCAGAAAAATCTGAATGCTGCTGTTGTTGATTGCTGCATTGGAATTCCAGTTTATTTTACTGATCTTCAGAGAAGAGCAGTCTTGGATGCTGCCACTATTGCAGGTTTGCACCCACTGCGCCTGTTTCATGAAACGACAGCAACTGCATTGGCTTATGGAATTTATAAGACGGATCTTCCTGAAAATGATCAGCTAAATGTTGCCTTTGTTGATATTGGACACGCTAGCATGCAAGTGTGCGTTGCTGGATATAAAAAGGGTCAGCTGAAAGTGCTGGCCCATTCATATGATAGGTCCCTAGGTGGGAGGGACTTTGACGAGGTTCTTTTCAATCATTTTGCTGCAAAGTTTAAGGAAGAGTACAAGATTGATGTATTCCAGAATGCTAGGGCTTGTATAAGGTTGAGGGCTGCTTGTGAGAAGCTGAAGAAAGTGCTTAGTGCTAATCCAGAGGCACCTTTGAACATTGAGTGCTTAATGGATGAGAAGGACGTTAGAGGCTTTATCAAGCGTGATGAGTTTGAGCAACTAAGTCTTCCAATATTGGAACGAGTGAAGGGACCTTTGGAGAAGGCACTTGCAGAGGCAGGTCTTACCGTTGAGGATGTGCACATGGTTGAGGTGGTTGGTTCTGGTTCTCGTGTACCAGCTATTAACAAAATATTGACTGAGTTCTTCAAAAAAGAGCCTAGGCGGACAATGAATGCAAGTGAATGTGTTGCCAGGGGTTGTGCATTGCAATGTGCAATTCTCAGTCCAACTTTTAAAGTGCGGGAATTTCAGGTCAATGAAAGCTTTCCTTTCTCAATTTCTCTCTCGTGGAAAGGTTCCAGTCCTGATACACAGGAAAGTGGACCAGATAATAAGCAAAGTACCCTTGTATTTGCCAAGGGCAATCCCATACCAAGTGTCAAGGCACTGACATTCTACAGGTCAGGAACCTTTTCTATTGATGTTCAATATGATGATGTGAGTGGTTTGCAAACACCTGCAAAGATCAGCACCTATACTATTGGCCCTTTCCAATCTTCACATAATGAAAAGGCAAAAATTAAAGTCAAAGTTCGGTTGAATTTGCATGGAGTTGTATCAGTCGAATCTGCAACTCTCGTGGAAGAGGAAGAGATTGAGGTTCCAGTTTCCAAAGAATCTGCAGCAGAAAATACCATGATGGAAACTGATCAAGCTCCTGCTGATGCTGCCGCACCTCCTAGCACCAATGACAATGATGTTAACATGCAAGATGCTAATGCCAAAGCAACTGCTGAAGCCCCTGGGGCCGAAAATGGTATCCCTGAGACAGGAGATAAGCCTGTGCAAATGGATACTGATACCAAGGTTGAGGCTCCAAAGAAGAAGGTGAAGAAAATAAACATTCCTGTTGCAGAGTTAGTTTATGGAGCAATGGTAACCGTGGATGTCCAGAAAGCTGTAGAGAGGGAATTTGAAATGGCTTTGCAAGATCGAGTGATGGAGGAAACAAAAGACAAGAAAAATGCAGTAGAGGCTTATGTTTATGACATGAGAAATAAGCTTAATGACAAATACCAAGAGTTTGTCACTGATTCAGACAGGGAAGCATTAACTGCTAAACTTCAGGAGGTGGAAGACTGGCTATATGAGGATGGTGAAGATGAAACTAAAGGTGTATACATTGCCAAACTAGAAGAGCTCCAGAAGCAAGGTGATCCAATTGAAGAGCGATACAAAGAATACATGGAGAGGGGTACAGTAATTGATCAGCTCAAATATTGCATAAATAGTTACAGAGAAGCTGCAATGTCAAATGATCCCAAATTCGATCACATTGACATCAACGAGAAACAGAAGGTCTTAAATGAGTGTGTGGAAGCAGAGAACTGGCTCAGGGAGAAGAAACAGCAACAGGACTCACTTCCAAAATATACCACTCCTGTACTTTTGTCAGCTGACATAAGAAAGAAAGCTGAAGCTGTTGACAGGTTCTGTAAGCCTATTATGACAAAACCAAAGCCAGCACCAAAGCCAACCACTCCAGAAGCGCCAGCAACCCCACCTCCTCAGGGTGGTGAGCAGCAACAACCACCATCTCAAGAGAATCCTAATGCTAGCACTAATGAAAATGCTGGGGACAATGGTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATCTTGCTGAACCAATGGAGACTGACAAATCAGAGAACACCGGATCTGCATAA 2661 0.4149 MSVVGFDFGNESCIVAVARQRGIDVVLNDESKRETPAVVCFGDKQRFLGTAGASSTMMNPKNSISQIKRLIGRQFADPELQRDLKSLPFVVTEGPDGYPLIHARYLGETKTFTPTQVFGMMLSNLKEIAQKNLNAAVVDCCIGIPVYFTDLQRRAVLDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASMQVCVAGYKKGQLKVLAHSYDRSLGGRDFDEVLFNHFAAKFKEEYKIDVFQNARACIRLRAACEKLKKVLSANPEAPLNIECLMDEKDVRGFIKRDEFEQLSLPILERVKGPLEKALAEAGLTVEDVHMVEVVGSGSRVPAINKILTEFFKKEPRRTMNASECVARGCALQCAILSPTFKVREFQVNESFPFSISLSWKGSSPDTQESGPDNKQSTLVFAKGNPIPSVKALTFYRSGTFSIDVQYDDVSGLQTPAKISTYTIGPFQSSHNEKAKIKVKVRLNLHGVVSVESATLVEEEEIEVPVSKESAAENTMMETDQAPADAAAPPSTNDNDVNMQDANAKATAEAPGAENGIPETGDKPVQMDTDTKVEAPKKKVKKINIPVAELVYGAMVTVDVQKAVEREFEMALQDRVMEETKDKKNAVEAYVYDMRNKLNDKYQEFVTDSDREALTAKLQEVEDWLYEDGEDETKGVYIAKLEELQKQGDPIEERYKEYMERGTVIDQLKYCINSYREAAMSNDPKFDHIDINEKQKVLNECVEAENWLREKKQQQDSLPKYTTPVLLSADIRKKAEAVDRFCKPIMTKPKPAPKPTTPEAPATPPPQGGEQQQPPSQENPNASTNENAGDNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLAEPMETDKSENTGSA 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00163 886 MobiDBLite consensus disorder prediction 513 570 - -
Cca10g00163 886 Gene3D - 600 705 IPR029048 -
Cca10g00163 886 MobiDBLite consensus disorder prediction 791 814 - -
Cca10g00163 886 MobiDBLite consensus disorder prediction 815 833 - -
Cca10g00163 886 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 709 798 IPR029048 -
Cca10g00163 886 CDD HSPA4_like_NDB 2 381 - -
Cca10g00163 886 MobiDBLite consensus disorder prediction 785 886 - -
Cca10g00163 886 SUPERFAMILY Actin-like ATPase domain 1 185 IPR043129 -
Cca10g00163 886 Gene3D Actin; Chain A, domain 4 230 313 - -
Cca10g00163 886 MobiDBLite consensus disorder prediction 529 545 - -
Cca10g00163 886 SUPERFAMILY Actin-like ATPase domain 195 380 IPR043129 -
Cca10g00163 886 Coils Coil 684 704 - -
Cca10g00163 886 Gene3D - 706 792 IPR029048 -
Cca10g00163 886 Gene3D - 5 374 - -
Cca10g00163 886 Gene3D - 38 113 - -
Cca10g00163 886 PANTHER HSC70CB, ISOFORM G-RELATED 1 831 - -
Cca10g00163 886 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 384 631 IPR029047 -
Cca10g00163 886 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 387 595 IPR029047 -
Cca10g00163 886 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 601 698 IPR029048 -
Cca10g00163 886 Pfam Hsp70 protein 3 699 IPR013126 GO:0005524|GO:0140662
Cca10g00163 886 Gene3D - 186 360 - -
Cca10g00163 886 PRINTS 70kDa heat shock protein signature 140 160 - -
Cca10g00163 886 PRINTS 70kDa heat shock protein signature 2 15 - -
Cca10g00163 886 PRINTS 70kDa heat shock protein signature 30 42 - -
Cca10g00163 886 PRINTS 70kDa heat shock protein signature 332 348 - -
Cca10g00163 886 PRINTS 70kDa heat shock protein signature 363 383 - -
Cca10g00163 886 PANTHER HEAT SHOCK 70 KDA PROTEIN 14 1 831 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00163 Cca-Chr10 1781667 1786780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00163 4 406 Calmodulin-binding Proteins AT1G16030 36.700 1.42e-85 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00163 K09489 - gmx:100778196 1449.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00163 10 1781667 1786780 Cca10g00163 10 1781667 1786780 ECH
Cca10g00163 10 1781667 1786780 Cca11g00205 11 2532341 2538318 PCT