Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00161 ATGGATGGCATTGAGGATGATGCGAGGTATCCCCCTAACCCCTATCGTATCATCACTCACCACCGAGGTTATGGTTATCAAAATTCTCCATATTCCCCCCCTGTTGATGCTGAATATGCCCAACATGATAGTGATCAAAATGAAGAACGAGAGAAGTTAGAAGGGGAAGATGAGGTTTACCAAAGTAACAGCCTTCAGATTCCCCAAAAGGATCCTGATGAAGAAGATGGCATGGATGGGGGTGGTGATGAAAATCATGATGACCATTATGATTATAACCATGATGATGATGATGATGATgaggaggaggaggaggaggaggaggaggaggGGGAAAATAagcagattagttatgatgCCACCAAAATTGAAGATGATTTAGAGTCGCACCCTAAAAAGCAAAAGCTGAAGAGTTTGATTTTGGCCTATGAACTCGCGCCTCGAGTGCCAGCACCATCCGAAGCTCCCTCAGTTCCTAAACCATCTTCTGGGGGTAGGAATTCACTTACTGACTGGACTGAGCAGGAGACATTTGTTCTTCTTGATGCATGGGGTGATAAGTTTCTACAACATGGAAGGAAGAGTCTTAGATGTGACGAATGGCAAGAAGTTGCAAAAATGGTGTCACAAGTTTCAAAAATTGAAAGGACTGAGACTCAGTGTAGAAATCGCCTAGATACATTGAAAAAGAAATACAAGAAGGAGAAGGCTAAATTTCCAGATAGTGATGGTGGAGCTTTCAAATGGGTTTATTTCAAGAGGATGGATGAGCTAATGTCTTCTCCTCCTCAACAAGCTCGTCTCTCTTGTGGTTTGGACTCAGGAGAGTATGTTTTTATGAACCCTGGAGTTTATTTGAACCATGCAAATGGGTTGGATGAAATGAGGGATAGTCCTGAGAATACTGAATCCACTGGTGAAGAAGGTTCTGATGGACCTCAAGCCAAGAAAAGAAGGAAAGGAAGGGGAAGTGGTGAAGCTTCTTCCTTCAGGTTACTTGCTGATTCCATTCAAAAAATCAGTAAGATATATGAGAAGATAGAAAATAATAAAAGGCAGCAGATGATGGAACTGGAAAAGATGAGGATGGATTTCCATAGGGAATTGGAAACACAGAAGAGGCAGATTTTAGAGAATTTGCAGTGCGAGATTTCAAAACTAGAGCAGAGAAATGATCAGAACGATGATTCTTCTGAGAATGTCCATATCCAAGAGGACGAGGGAAGAAAAGGACCAACGCCTTACTCTGGAAAATACAAAGTTGGTGTTGCGTGCTTGGAAGCTTTAAACACCTGA 1296 0.402 MDGIEDDARYPPNPYRIITHHRGYGYQNSPYSPPVDAEYAQHDSDQNEEREKLEGEDEVYQSNSLQIPQKDPDEEDGMDGGGDENHDDHYDYNHDDDDDDEEEEEEEEEEGENKQISYDATKIEDDLESHPKKQKLKSLILAYELAPRVPAPSEAPSVPKPSSGGRNSLTDWTEQETFVLLDAWGDKFLQHGRKSLRCDEWQEVAKMVSQVSKIERTETQCRNRLDTLKKKYKKEKAKFPDSDGGAFKWVYFKRMDELMSSPPQQARLSCGLDSGEYVFMNPGVYLNHANGLDEMRDSPENTESTGEEGSDGPQAKKRRKGRGSGEASSFRLLADSIQKISKIYEKIENNKRQQMMELEKMRMDFHRELETQKRQILENLQCEISKLEQRNDQNDDSSENVHIQEDEGRKGPTPYSGKYKVGVACLEALNT 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00161 431 Gene3D - 172 234 - -
Cca10g00161 431 ProSiteProfiles Myb-like domain profile. 172 229 IPR001005 -
Cca10g00161 431 Coils Coil 218 238 - -
Cca10g00161 431 Coils Coil 344 397 - -
Cca10g00161 431 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 77 400 IPR044823 -
Cca10g00161 431 MobiDBLite consensus disorder prediction 290 328 - -
Cca10g00161 431 PANTHER OS01G0718900 PROTEIN 77 400 - -
Cca10g00161 431 MobiDBLite consensus disorder prediction 1 134 - -
Cca10g00161 431 MobiDBLite consensus disorder prediction 114 134 - -
Cca10g00161 431 MobiDBLite consensus disorder prediction 388 418 - -
Cca10g00161 431 MobiDBLite consensus disorder prediction 41 58 - -
Cca10g00161 431 MobiDBLite consensus disorder prediction 388 413 - -
Cca10g00161 431 Pfam Myb/SANT-like DNA-binding domain 171 258 IPR044822 -
Cca10g00161 431 MobiDBLite consensus disorder prediction 149 169 - -
Cca10g00161 431 MobiDBLite consensus disorder prediction 93 113 - -
Cca10g00161 431 MobiDBLite consensus disorder prediction 310 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00161 Cca-Chr10 1773062 1776265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00161 318 402 Trihelix Transcription Factor Family AT3G14180 37.647 1.84e-10 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Cca10g00161 Myb_DNA-bind_4 2.4e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00161 - - gmx:100814194 597.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00161 10 1773062 1776265 Cca10g00161 10 1773062 1776265 ECH