Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00159 ATGGGTGTTAACTCCAACAGAGTGGAACACTTCGACAGCCATGAAACCACCATCAAAATCCAAACCATGCCATCATTTCAAATCCATGCAGTGCAGTTGCCACCCCAACAAACCACTCTCCATAAACTCAGACACAGACTCTCCGAAATCTTCTTCCCCGATGACCCTCTCCACCGTTTCCAAAACCAAACTTGCTTCAAAAAGTTCCTCCTCGCACTTCAGTACCTCTTCCCCATTTTCCACTGGGCCCCTCATTACAACTTTACCCTTCTCCGTACTGATCTCATTTCCGGCCTCACCATTGCCAGTCTCGCCATTCCTCAGGGGATCAGTTACGCCAAACTTGCAAACTTGCCACCAATTGTGGGACTATATTCAAGTTTCGTGCCTCCATTGGTTTACTCACTTCTCGGAAGTTCTAAACATCTCGGTGTTGGACCGGTTTCCATTGCGTCTTTGGTAATGGGATCAATGTTGAACGAGAAAATTTCTTACACTCAAGACCCAACTCTTTATCTAGGAATGGCTTTCACCGCAACTTTCTTTGCTGGTGTGTTCCAAGCTTCTTTGGGTATACTAAGGTTAGGATTCGTGATTGATTTTCTGTCGAAGGCAACGCTGGTTGGATTCACGGGTGGAGCTGCCATTATTGTTTCACTGCAGCAGCTTAAAGGCTTACTTGGAATCGTGCACTTTTCTAACAAGATGCAAATAATCCCTGTTTTGATCTCTGTTTTCGACCAAAGACACGAGTGGTCATGGCAAACCATTATTCTGGGATTCGGCTTCCTGGCCATCCTGCTGACAACAAGGCACATTAGCTTGAAGAAACCAAAACTATTCTGGGTTTCAGCAGCTGCCCCATTGACAACAGTTATTCTGTCAACCATTTTGGTCTTTCTTCTGAGAAATAAGACTCACCAAATTTCAGTTATTGGGCACTTACCAAAGGGAGTTAATCCACCATCATCAAACATGTTATACTTCAGTGGTGCTTACTTGGCTCTTGCTATCAAAACTGGCATCATCACCGGGATCTTATCTCTCACTGAAGGAATTGCAGTAGGTAGAACATTTGCATCACTTCAGAACTACCAGGTGGATGGAAACAAAGAAATGATGGCCATTGGTCTAATGAACATTGCTGGCTCTTGTTCTTCATGTTATGTTACAACGGGATCCTTTTCTCGATCAGCTGTTAACTATAATGCCGGAGCAAAGACAACGGTTTCAAATATAATCATGGCTGCAGCTGTTCTAGTGACCCTTTTGTTTCTCATGCCTCTGTTCTACTATACACCAAATTTTGTCCTAGCGGCCATTATCATCACTGCTGTGATTGGACTAATAGATTATCAATCTGCATATAAGTTGTGGAAGGTTGACAAGCTTGATTTCGTGGCCTGTTTGTGCTCTTTTTTTGGGGTTCTGTTCATTTCAGTGCCTTTAGGCCTTGGTATAGCGATTGCCATATCAGTTTTTAAAATCCTGCTTCATGTCACTCGACCAAACACTTTGGTTTTGGGGAATATACCAGGAACACAAATATTCCACAACATAAACCAATACAAAGAAGCTTCAAGGGTTCCTTCATTTCTCATTTTGGCTGTTGAGTCTCCAATCTATTTTGCTAACTCAACTTATCTTCAAGAAAGGATACTGAGATGGGTTCGAGAAGAGGAAGAACATATAAAAGCCAGCAATGAAGCTTCATTGAAGTGCTTAGTTTTAGACATGTCAGCTGTCACTGCCATAGACACAAGTGGGCTTGACACTTTGTGTGAACTAAGAAAGACGCTGGAGAAGAGATCACTTCAGCTCGTGTTGGCAAACCCTGTTGGAAATGTGATGGAGAAATTGCACAAGTCAAAGATTTTAGAATCCTTTGGATTAAAAGGAGTGTATCTGACTGTGGGAGAAGCTGTGGCTGACATTGCATCGCTCTGGAAGGCTCAGGCATGA 1962 0.4307 MGVNSNRVEHFDSHETTIKIQTMPSFQIHAVQLPPQQTTLHKLRHRLSEIFFPDDPLHRFQNQTCFKKFLLALQYLFPIFHWAPHYNFTLLRTDLISGLTIASLAIPQGISYAKLANLPPIVGLYSSFVPPLVYSLLGSSKHLGVGPVSIASLVMGSMLNEKISYTQDPTLYLGMAFTATFFAGVFQASLGILRLGFVIDFLSKATLVGFTGGAAIIVSLQQLKGLLGIVHFSNKMQIIPVLISVFDQRHEWSWQTIILGFGFLAILLTTRHISLKKPKLFWVSAAAPLTTVILSTILVFLLRNKTHQISVIGHLPKGVNPPSSNMLYFSGAYLALAIKTGIITGILSLTEGIAVGRTFASLQNYQVDGNKEMMAIGLMNIAGSCSSCYVTTGSFSRSAVNYNAGAKTTVSNIIMAAAVLVTLLFLMPLFYYTPNFVLAAIIITAVIGLIDYQSAYKLWKVDKLDFVACLCSFFGVLFISVPLGLGIAIAISVFKILLHVTRPNTLVLGNIPGTQIFHNINQYKEASRVPSFLILAVESPIYFANSTYLQERILRWVREEEEHIKASNEASLKCLVLDMSAVTAIDTSGLDTLCELRKTLEKRSLQLVLANPVGNVMEKLHKSKILESFGLKGVYLTVGEAVADIASLWKAQA 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00159 653 ProSitePatterns SLC26A transporters signature. 120 141 IPR018045 GO:0008271|GO:0008272
Cca10g00159 653 Gene3D STAS domain 502 646 IPR036513 -
Cca10g00159 653 PANTHER SULFATE TRANSPORTER 15 652 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cca10g00159 653 CDD STAS_SulP_like_sulfate_transporter 523 638 - -
Cca10g00159 653 Pfam STAS domain 523 641 IPR002645 -
Cca10g00159 653 SUPERFAMILY SpoIIaa-like 527 643 IPR036513 -
Cca10g00159 653 PANTHER SLC26A/SULP TRANSPORTER-RELATED 15 652 - -
Cca10g00159 653 Pfam Sulfate permease family 91 470 IPR011547 GO:0016021
Cca10g00159 653 ProSiteProfiles STAS domain profile. 522 645 IPR002645 -
Cca10g00159 653 TIGRFAM sulP: sulfate permease 78 641 IPR001902 GO:0015301|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00159 Cca-Chr10 1749710 1754425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00159 1 653 Inorganic Solute Cotransporters AT3G15990 74.885 0.0 1031
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00159 K17471 - gmx:100812617 1173.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00159 10 1749710 1754425 Cca11g00203 11 2514160 2518676 PCT