Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00141 ATGGATGTTACTTCTCTGGGTCCAAATAGCAACACTCAAACCGACCAACACCCTTTGCTGATGGAGCAGCCAGAAATCCGTAATGGTCATCAGCACATAATTGACATTACAAGGAATGGTGAAGCTATAACCACATCATCACACAATGATCAACACTCTGAAATGCATTTAGCACAGAATGAAGATCAACCAACTGGGGACACACAAGATTCCACTCATCAAACGTCTTCATCTTCTGCATCCAGATTAAACTCTAGAAATTCTGCTTCGTTGAGACGAGGTGAGGGGTATGGTCATCGTGGAAGAAGTCCATTGAATTCTGGACTGTGGATTTCTGTTGAGCTTGTTGTCACTGTAAGTCAGATCATAGCATCTATCATCATTTTGTCATTGTCCAGGAATGAACATCCACAGGCCCCGTTATTTGCATGGATTGTGGGTTATGCATCTGGTTGTGTTGCCACACTTCCCATTCTCTACTGGCGTTTTCGAAACCGTAATCAAAGCAATGAACAAGATGCCTCTCAACTATCTCAAGGATCTTCTGGAAACAATCCTCCAGATCGAACTTATACTGCCATCTACGTTTCTCATGTCTCAGATGAGGAGAATGGTCATGCTGCACAATCTGCCACAAGAAACACTATAATTCCTGGAGCCTTTACTTCTAGGCTTAATGGATTAGTAGACCATTTCAAGATGGCCTTGGATTGCTTCTTTGCTGTATGGTTTGTAGTAGGAAATGTTTGGATCTTTGGAGGTCACACTTCTGCTTCCGATGCTCCACAATTGTATAGGTTATGTATTGTGTTTCTTACCTTTAGCTGTATTGGATATGCAATGCCATTTATACTTTGTGCAACAATTTGTTGCTGCCTACCTTGTATAATTTCTGTTTTGGGCATTCGGGAGGATTTTTCTCAAAATAGAGGAGCAACAGCAGAATCAATTAATGCTCTACCAATCTTCAAATTCAAAATGAAGGACAGTGAAAATGGTGATGATCAGGATGTCAATGCAGCTATAGATGAAGGTGGAATTTTGGCTGCAGGGACAGAAAAAGAGCGAGTAATATCAGGAGAAGACGCGGTAAGTTTAATTGGTGACTATTTGTTTTTAAGTTATGAATTGACAACAAAAGAGTGTTAG 1149 0.4073 MDVTSLGPNSNTQTDQHPLLMEQPEIRNGHQHIIDITRNGEAITTSSHNDQHSEMHLAQNEDQPTGDTQDSTHQTSSSSASRLNSRNSASLRRGEGYGHRGRSPLNSGLWISVELVVTVSQIIASIIILSLSRNEHPQAPLFAWIVGYASGCVATLPILYWRFRNRNQSNEQDASQLSQGSSGNNPPDRTYTAIYVSHVSDEENGHAAQSATRNTIIPGAFTSRLNGLVDHFKMALDCFFAVWFVVGNVWIFGGHTSASDAPQLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGIREDFSQNRGATAESINALPIFKFKMKDSENGDDQDVNAAIDEGGILAAGTEKERVISGEDAVSLIGDYLFLSYELTTKEC 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00141 382 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 367 - -
Cca10g00141 382 MobiDBLite consensus disorder prediction 44 91 - -
Cca10g00141 382 MobiDBLite consensus disorder prediction 44 99 - -
Cca10g00141 382 PANTHER PROTEIN, PUTATIVE-RELATED 1 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00141 Cca-Chr10 1529604 1533530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00141 1 367 C3H Transcription Factor Family AT1G80400 54.223 7.77e-138 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00141 - - gmx:100819516 653.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00141 10 1529604 1533530 Cca10g00141 10 1529604 1533530 ECH