Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00140 ATGCTATTGCTAATGGAGAAACAAGGTCTTGGTCTTGGACTTGAGATCACTGAGCTAAGGTTGGGGCTTCCCTGTGGAGAACCTGTGGagaagaaggagaagaaggagaagaagaGAGTGTTCTCGGAGATTCAAGCtggtgatgatgatgatgatgaAAACAGCTCCTCCGAAGACCGGAAAGTGCAAACCAAGAACCAAGTCGTGGGGTGGCCTCCGCTGTGTTCCTACCGGAAGAAGAACACCGTAAGTCAAACCAAAAAGTACGTCAAAGTTAGCATGGATGGAGCTCCTTTCTTGCGTAAAATTGATTTAGCTATGCACAAGGGATATTCCGACTTGGCCTTGTCCTTCGAGAACTTCTTCTCTTGCTATGGAATTCGCGAAGCGTTGAAGGATGCGGACAATGCTGAACACGTTCCCATCTACGAAGACAAAGATGGTGACTGGATGCTAGTTGGAGATGTCCCTTGGGAGATGTTTATTGAGTCATGCAAGAGGTTGAGGATAATGAAGAGATCAGATGCAAAGGGCTTCGATCTGCAACCAAAAGGGTCTTTAAAGGGATTTATAGAAGGCGTGACAAAGTGA 591 0.4298 MLLLMEKQGLGLGLEITELRLGLPCGEPVEKKEKKEKKRVFSEIQAGDDDDDENSSSEDRKVQTKNQVVGWPPLCSYRKKNTVSQTKKYVKVSMDGAPFLRKIDLAMHKGYSDLALSFENFFSCYGIREALKDADNAEHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDAKGFDLQPKGSLKGFIEGVTK 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00140 196 MobiDBLite consensus disorder prediction 27 45 - -
Cca10g00140 196 Gene3D - 81 184 - -
Cca10g00140 196 PANTHER AUXIN-RESPONSIVE PROTEIN IAA6 11 179 - -
Cca10g00140 196 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 179 IPR003311 GO:0005634|GO:0006355
Cca10g00140 196 Pfam AUX/IAA family 35 179 IPR033389 -
Cca10g00140 196 SUPERFAMILY CAD & PB1 domains 81 172 - -
Cca10g00140 196 MobiDBLite consensus disorder prediction 27 65 - -
Cca10g00140 196 ProSiteProfiles PB1 domain profile. 87 175 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00140 Cca-Chr10 1513925 1517231 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00140 84 194 B3 DNA Binding Superfamily AT4G23980 34.234 2.39e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Cca10g00140 AUX_IAA 8.7e-44 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00140 K14484 - gmx:100305535 311.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00140 10 1513925 1517231 Cca10g00140 10 1513925 1517231 ECH
Cca11g00194 11 2378848 2382601 Cca10g00140 10 1513925 1517231 PCT