Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00139 ATGTCATCAGAAAGTGGCATCCACTCTTCCTCCTCCTTGGAATCTCACGCCGTTGATTGTAACTTGAAGGAAACAGAGCTCACGCTGGGTCTTCCCGGTACCAAAACTGGCTCAAAACGTGCCTTCTCCGACACCCTTCTTCATCTCGCCACTTCTCAAAACAAAATCTTGCGCCCCACCTCCAAGGAACAAGTGGTGGGGTGGCCACCGGTGAGGGCAAGCAGAAAGAATGTTCTGAAGAGTTGCAAATTCGTGAAGGTAGCTGTAGATGGAGCTCCATATCTAAGAAAAGTGGATCTTGAAATGTACGATAGTTATGAGCATTTGATGAGGGAATTAGAGACCATGTTTTGTGGCCTAGCCATTCGTAATCATTTGATGAATGAGAGGAAACTGATGGAGTCCGGAAATGGAATGGAATACATGCCAACCTATGAGGATAAGGATGGTGACTGGATGTTGGTTGGGGATGTACCATGGAAGATGTTTGTTGAATCATGCAAAAGGATAAGACTTATGATAAGCTCAGAGGTCATCGGCTTAGGTACGAGGTTTGGTTCAAAATGTAGGAGTTCCACCTAG 582 0.457 MSSESGIHSSSSLESHAVDCNLKETELTLGLPGTKTGSKRAFSDTLLHLATSQNKILRPTSKEQVVGWPPVRASRKNVLKSCKFVKVAVDGAPYLRKVDLEMYDSYEHLMRELETMFCGLAIRNHLMNERKLMESGNGMEYMPTYEDKDGDWMLVGDVPWKMFVESCKRIRLMISSEVIGLGTRFGSKCRSST 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00139 193 ProSiteProfiles PB1 domain profile. 82 177 IPR000270 GO:0005515
Cca10g00139 193 PANTHER AUXIN-RESPONSIVE PROTEIN IAA15 10 179 - -
Cca10g00139 193 Gene3D - 77 188 - -
Cca10g00139 193 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 10 179 IPR003311 GO:0005634|GO:0006355
Cca10g00139 193 SUPERFAMILY CAD & PB1 domains 75 174 - -
Cca10g00139 193 Pfam AUX/IAA family 80 184 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00139 Cca-Chr10 1499569 1502367 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00139 85 185 B3 DNA Binding Superfamily AT3G61830 33.663 1.27e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Cca10g00139 AUX_IAA 1.7e-45 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00139 K14484 - gmx:100500488 307.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00139 10 1499569 1502367 Cca10g00139 10 1499569 1502367 ECH