Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00134 ATGAAGGTGAAGAAAGCGCTGAGCGAGGAAACGGAAGTGGTGAAACAACTAAACGCAGAGAGAAGAGCGTTTAAGGAAACCCCCACACACTCACACAAATCGTCCTTTCTTTTTCAACCGTTGGATGAGTATCCAATTTCTACTTCCTCCATCCACGATCATGATCCCGACGTCTGGAGGCCGCCCACTCGCGACGCCAGGAGGCCCGCCAGGCCCGCTCCTCGCAAGGACGGGGCCTGGGCCCGTGGTCCTACCAGGCCCGCCTCCAAGCCCGCGAAGCCCAGGGTTAACTCTGGGCCCAGGCCTCCCGCCCCCACAGGGAAGAGAGGCACCGGGAAGTCGCATTCAGTTGCTAATGGGGCTGATGGAAAGTCAAAGAGGTCAGAATATGAAGGTGGTGATCCAGAGTTAGCAGAAATGCTTGAGAGGGATGTGTTAGAAACGTCTCCTGGTGTGAGATGGGATGATGTTGCAGGACTCAATGAAGCCAAGAGGCTTCTAGAAGAAGCCGTTGTGCTTCCCTTGTGGATGCCTGAATATTTTCAGGGAATAAGGAGACCGTGGAAAGGTGTTCTCATGTTTGGACCTCCAGGAACTGGGAAGACGCTTCTTGCTAAAGCAGTTGCTACCGAATGTGGTACCACTTTTTTCAACGTTTCTTCTGCTACTTTGGCTTCTAAATGGCGTGGAGAGAGCGAGCGCATGGTACGGTGTTTGTTTGATCTTGCAAGAGCGTATGCACCCAGTACAATTTTCATTGATGAAATTGATTCTCTCTGCAATGCTAGGGGGGCTTCCGGGGAGCATGAATCATCCAGAAGGGTGAAGTCTGAACTTCTAGTTCAGGTTGATGGTGTAAATAATAGTTCCACAAATGAAGATGGTACCCGTAAAATAGTAATGGTTTTGGCAGCCACCAACTTTCCATGGGACATAGATGAAGCACTGAGGAGAAGGTTGGAAAAGCGTATATACATTCCTCTTCCAAATTTTGAGAGTCGTAAAGAGCTGATCCGTATCAATTTGAAGACAGTAGAGGTGGCCCCTAATGTGAACATAGATGAAGTGGCACGGCGGACAGAGGGATATAGTGGAGATGACTTGACAAATGTGTGCCGTGATGCTTCTCTGAATGGAATGAGGCGTAAGATAGCAGGAAAGACGCGTGATGAGATAAAGAACATGTCAAAGGATGAAATTTCGAAGGATCCTATTGCAATGTGTGATTTTGAAGAAGCTCTCAAGAAAGTCCAACCAAGTGTTTCTCAGGCTGACATTGAACGCCATGCGAAGTGGTTTGCCGAATTTGGATCAGCATAA 1320 0.4871 MKVKKALSEETEVVKQLNAERRAFKETPTHSHKSSFLFQPLDEYPISTSSIHDHDPDVWRPPTRDARRPARPAPRKDGAWARGPTRPASKPAKPRVNSGPRPPAPTGKRGTGKSHSVANGADGKSKRSEYEGGDPELAEMLERDVLETSPGVRWDDVAGLNEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNSSTNEDGTRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVAPNVNIDEVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMSKDEISKDPIAMCDFEEALKKVQPSVSQADIERHAKWFAEFGSA 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00134 439 Pfam AAA+ lid domain 350 391 IPR041569 -
Cca10g00134 439 SMART AAA_5 187 330 IPR003593 -
Cca10g00134 439 CDD AAA 185 328 - -
Cca10g00134 439 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 1 439 IPR028596 GO:0008017|GO:0008568|GO:0051013
Cca10g00134 439 MobiDBLite consensus disorder prediction 46 132 - -
Cca10g00134 439 Gene3D - 329 415 - -
Cca10g00134 439 ProSitePatterns AAA-protein family signature. 300 319 IPR003960 GO:0005524|GO:0016887
Cca10g00134 439 Gene3D - 149 429 IPR027417 -
Cca10g00134 439 PANTHER AAA DOMAIN-CONTAINING 1 439 - -
Cca10g00134 439 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A1 1 439 - -
Cca10g00134 439 Coils Coil 7 27 - -
Cca10g00134 439 MobiDBLite consensus disorder prediction 48 75 - -
Cca10g00134 439 Pfam ATPase family associated with various cellular activities (AAA) 191 328 IPR003959 GO:0005524|GO:0016887
Cca10g00134 439 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 425 IPR027417 -
Cca10g00134 439 Pfam Vps4 C terminal oligomerisation domain 392 437 IPR015415 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00134 Cca-Chr10 1475202 1478613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00134 129 420 Calmodulin-binding Proteins AT3G56690 37.500 2.73e-51 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00134 K07767 - zju:112489859 699.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00134 10 1475202 1478613 Cca10g00134 10 1475202 1478613 ECH
Cca10g00134 10 1475202 1478613 Cca11g00191 11 2339734 2344073 PCT