Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00121 ATGAAGGGAGAAGGAGAAGCAGCATGCTCTGAAAGAGAAAGGAACTTTAACTTAATGGCCAAAACTGAACTCTGCCGGAGATTCAAAAAAGGCGCCTGCGCTCATGGCTCCAAATGCAACTACGCCCACTCCACCGCCGAGCTCCGGCGTCAACCCAAATTCTGCAGATTATTCCTTCAAAACAAACACTGTCCCTACGGACGCACTTGCCGCTACATCCATTCCACTTCCGCCACTCCTTTTCCAGAATTAGAGAAATTTGATCGGCACTCTTGTGCAGAATACCAGAGAATGAAAACTTATGTGGCTGCTCCAAGTGATGGCTACCCTTCTGCAGAACACAGGATAATGCAAActtctgctgctgctgctgcAAATGTTTCAACTAGCTCTTCGCAAAAGAATGAAGCAATACCATCATATGCTGTGAAGCGCAGATTCAAGGATAACGAGTTACAGAAGATCAGTCGCATCTATGCGGATTGGATATGA 492 0.4411 MKGEGEAACSERERNFNLMAKTELCRRFKKGACAHGSKCNYAHSTAELRRQPKFCRLFLQNKHCPYGRTCRYIHSTSATPFPELEKFDRHSCAEYQRMKTYVAAPSDGYPSAEHRIMQTSAAAAANVSTSSSQKNEAIPSYAVKRRFKDNELQKISRIYADWI 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00121 163 Gene3D - 52 78 - -
Cca10g00121 163 Gene3D - 15 51 - -
Cca10g00121 163 SUPERFAMILY CCCH zinc finger 51 77 IPR036855 GO:0046872
Cca10g00121 163 PANTHER CCCH ZINC FINGER/TIS11-RELATED 14 162 IPR045877 GO:0003729
Cca10g00121 163 PANTHER ZINC FINGER C-X8-C-X5-C-X3-H TYPE FAMILY PROTEIN 14 162 - -
Cca10g00121 163 SUPERFAMILY CCCH zinc finger 18 50 IPR036855 GO:0046872
Cca10g00121 163 ProSiteProfiles Zinc finger C3H1-type profile. 19 46 IPR000571 GO:0046872
Cca10g00121 163 SMART c3hfinal6 49 76 IPR000571 GO:0046872
Cca10g00121 163 SMART c3hfinal6 19 45 IPR000571 GO:0046872
Cca10g00121 163 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 21 44 IPR000571 GO:0046872
Cca10g00121 163 ProSiteProfiles Zinc finger C3H1-type profile. 49 77 IPR000571 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00121 19 77 C3H Transcription Factor Family AT1G68200 41.791 4.78e-11 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca10g00121 zf-CCCH 2.3e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00121 - K15308 ccaj:109805785 338.191