Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00101 ATGGTGCAATCTAAGAAGTTCAGAGGTGTCAGGCAACGCCATTGGGGCTCGTGGGTTTCTGAGATTCGCCACCCTTTACTGAAAAGAAGGGTGTGGCTTGGGACGTTTGGAACAGCTGAAGAAGCAGCTAGAGCATATGATGAGGCAGCCATTTTGATGAGTGGAAGAAACGCCAAAACAAACTTCCCAGTTGAGAATAATCAAAAGGGCAATCACAGTTCCACTTCATTTTCTTCCAAAACGTTTTCTCCAGTTCTCAATGCAAAGCTCAAGAAGTGCTGCAAGTTCCCTTCGCCTTCCCTAACTTGCCTAAGGCTTGACACAGAGAATTCACACTTTGGAGTGTGGCAAAAGCGAGCAGGACCACGTTCTGAATCAAACTGGATCATGACGGTTGAGTTGGAAAGGAAGAATATTAATATTAACCATGGAGCTTCTGATTCAGAGAATAAGGTTAATAAAGCTAAAGCAGATGAAAGCAACAATATTGGGTTGGATGAGGAGCAGATGATTGCGTTGCAGATGATAGAAGAGCTTCTGAATATGAATTGA 552 0.4348 MVQSKKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFGTAEEAARAYDEAAILMSGRNAKTNFPVENNQKGNHSSTSFSSKTFSPVLNAKLKKCCKFPSPSLTCLRLDTENSHFGVWQKRAGPRSESNWIMTVELERKNININHGASDSENKVNKAKADESNNIGLDEEQMIALQMIEELLNMN 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00101 183 CDD AP2 5 64 IPR001471 GO:0003700|GO:0006355
Cca10g00101 183 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Cca10g00101 183 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Cca10g00101 183 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Cca10g00101 183 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 183 - -
Cca10g00101 183 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Cca10g00101 183 Pfam AP2 domain 6 54 IPR001471 GO:0003700|GO:0006355
Cca10g00101 183 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Cca10g00101 183 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WIN1-LIKE 1 183 - -
Cca10g00101 183 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00101 Cca-Chr10 1056279 1057484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00101 1 183 AP2-EREBP Transcription Factor Family AT1G15360 61.836 2.52e-77 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca10g00101 AP2 7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00101 - - gmx:100778381 283.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00101 10 1056279 1057484 Cca10g00101 10 1056279 1057484 ECH