Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00100 ATGGCGCAAATTCTGCTGCATGGGACCCTCCATGCCACAATCTACGAGGTGGATAAACTCAAGACTGGAAGTAGTAATATTTTAACCAAGCTGGTGCAAAACATCGAGGAGAAAGTTGGTGTTGGGAAAGGAATTCCTAAATTATATGCAACCATTGATCTAGAGAAGGCACGCGTGGGAAGGACCAGAATCATAGAAAAGGAGCACACAAATCCAAAATGGTACGAGTCTTTTCACATTTATTGTGCTCATACGGCTTCAAATATCATATTCACAGTGAAAGATGATAATCCTATTGGCGCAACCTTAACCGGAAGAGCATATGTGCCTGTTGAGGAGATCTTGGATGGCAAAGAAATAGATAGATGGGTTGAAATACTAGATGATGATAAAAAACCAATACATTCTCATTCAAAGATTCACGTTAAGTTGCAATACTTTGATGTTTCAAAAGACCTCAACTGGGGCAAAGGCATTAGAAGTCCTAAATTCCCTGGAGTTCCCTACACTTTCTACTCACAGAGGCAAGGATGTAAGGTATCTCTGTACCAAGATGCTCATCCCTACACGTTCTTCTCACAAAGACAAGGATGTAGGGTTTCTTTGTACCAAGATGCTCATGTCCCAGACAACTTTGTCCCTAGAATACCACTTGTTGGAGGCCAAACATACCAACCTCATAGATGTTGGGAAGATGTTTTTGATGCAATCAATAACGCACAACACTTGATATACATTACTGGATGGTCTGTTTACACTGAGATTACGTTGGTGAGAGATTCTAAGAGGCCAAAGCCTGGTGGAGATGCAACACTTGGTGAGCTTCTCAAGAAAAAAGCACGTGATGGTGTCAGGGTTTTGATGCTTGTGTGGGACGATAGAACTTCGGTTCCTTTGTTGAAGAAAGATGGGTTGATGGCTACTCATGATGAAGACACCGGGAACTACTTCTACGAAAGTGATGTGCACTGTGTTTTGTGCCCTCGAAATCCAGATGATGGTGAGAGCAAAATTCAGGATTTGGAAATCTCAACCATGTTTACTCATCATCAGAAAATCGTGGTAGTGGACAGTGCTTTGCCGAATGGAATATCAGATAAGAGAAGAATTGTGAGCTTTGTGGGGGGTATTGATCTTTGTGATGGAAGATATGACACTCAGTTTCATTCACTTTTTAGAACATTAAACACAGTACATCATGATGATTTTCATCAGCCTAACTTTTCTGGTACTTCAATAAAGAAAGGTGGTCCGAGGGAACCTTGGCATGACATACACTCAAAACTTGAAGGGCCTATTGCATGGGATGTTTTGTTCAACTTTGAGCAAAGATGGAAGAAGCAAGATCCATTTGATGGTGGAGCTGCTTTTGGGTTCCCAGAGACTCCTGAAGAGGCTGCAAGATCTGGACTCGTTAGTGGGAAGGATAATATAATAGACCGTGGCATTCAAGATGCATATATTAATGCCATTAGACGTGCCAAAAATTTCATCTACATTGAGAATCAGTATTTCCTTGGAAGTTGTTATGGTTGGAGTGCTGATGGTATCAAACCTGAAGACATTGGTGCTTTGCATTTGATCCCGAAGGAGCTTTCACTTAAGATTGTTAGTAAGATTGAAGGTGGAGAAAGGTTTAGTGTGTATGTTGTGGTTCCAATGTGGCCAGAGGGTTACCCTGAGAAAGGTACAGTTCAGGCAATATTGGACTGGCAGAGGAGAACAATGGATATGATGTACAAGGATGTTGTTGGAGCACTAAAGGCCAAGGGAATTGATGAAGATCCTAGGAACTATTTGACATTCTTCTGCCTTGGGAATCGGGAGCTCAAGAAACCAGAAGAGTATGAGCCTCCAGAAAGACCTGATCCTGATACAGATTATATGAGAGCCCAAGAGTCTCGACGCTTCATGATTTATGTTCATGCAAAAATGATGATAGTTGATGATGAATACATAATCATTGGATCTGCTAACATAAACCAGAGATCGATGGATGGTGCAAGAGACTCAGAGATTGCAATGGGTGCTTATCAACCCTATCATTTGGCTACAAGGCAACCAGCAAGAGGTCAAATCCATGGTTTTCGTATGTCATTGTGGTATGAGCACCTTGGCTTGCTTGATGACTCATTCCTCCACCCTGAAAGTGAAGAATGCATTAAGAAGGTGAACCAGATTGGTGACAAGTATTGGGATCTCTACACAACAGAGCCACTTGAGCAAGACCTTCCTGGCCACCTGCTTCGGTATCCAATTGCGATTTCCAGTGAAGGAAGTGTGACACAATTGCAAGGATTTGAATTCTTCCCTGACACCAAGGCTCCTGTTCTTGGGGCCAAATCTGACTATATGCCACCTATCCTTACTACTTAG 2376 0.4217 MAQILLHGTLHATIYEVDKLKTGSSNILTKLVQNIEEKVGVGKGIPKLYATIDLEKARVGRTRIIEKEHTNPKWYESFHIYCAHTASNIIFTVKDDNPIGATLTGRAYVPVEEILDGKEIDRWVEILDDDKKPIHSHSKIHVKLQYFDVSKDLNWGKGIRSPKFPGVPYTFYSQRQGCKVSLYQDAHPYTFFSQRQGCRVSLYQDAHVPDNFVPRIPLVGGQTYQPHRCWEDVFDAINNAQHLIYITGWSVYTEITLVRDSKRPKPGGDATLGELLKKKARDGVRVLMLVWDDRTSVPLLKKDGLMATHDEDTGNYFYESDVHCVLCPRNPDDGESKIQDLEISTMFTHHQKIVVVDSALPNGISDKRRIVSFVGGIDLCDGRYDTQFHSLFRTLNTVHHDDFHQPNFSGTSIKKGGPREPWHDIHSKLEGPIAWDVLFNFEQRWKKQDPFDGGAAFGFPETPEEAARSGLVSGKDNIIDRGIQDAYINAIRRAKNFIYIENQYFLGSCYGWSADGIKPEDIGALHLIPKELSLKIVSKIEGGERFSVYVVVPMWPEGYPEKGTVQAILDWQRRTMDMMYKDVVGALKAKGIDEDPRNYLTFFCLGNRELKKPEEYEPPERPDPDTDYMRAQESRRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGAYQPYHLATRQPARGQIHGFRMSLWYEHLGLLDDSFLHPESEECIKKVNQIGDKYWDLYTTEPLEQDLPGHLLRYPIAISSEGSVTQLQGFEFFPDTKAPVLGAKSDYMPPILTT 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00100 791 Pfam Phospholipase D C terminal 709 781 IPR024632 -
Cca10g00100 791 PANTHER PHOSPHOLIPASE D 451 791 - -
Cca10g00100 791 PIRSF PLD_plant 188 451 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Cca10g00100 791 PIRSF PLD_plant 1 189 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Cca10g00100 791 PIRSF PLD_plant 449 791 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Cca10g00100 791 Gene3D Endonuclease Chain A 461 683 - -
Cca10g00100 791 SMART pld_4 637 664 IPR001736 GO:0003824
Cca10g00100 791 SMART pld_4 345 383 IPR001736 GO:0003824
Cca10g00100 791 SMART C2_3c 9 123 IPR000008 -
Cca10g00100 791 Pfam C2 domain 9 126 IPR000008 -
Cca10g00100 791 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 637 664 IPR001736 GO:0003824
Cca10g00100 791 ProSiteProfiles C2 domain profile. 1 124 IPR000008 -
Cca10g00100 791 Gene3D C2 domain 6 155 IPR035892 -
Cca10g00100 791 PANTHER PHOSPHOLIPASE D 188 448 - -
Cca10g00100 791 PANTHER PHOSPHOLIPASE D 188 448 IPR015679 -
Cca10g00100 791 SUPERFAMILY Phospholipase D/nuclease 471 721 - -
Cca10g00100 791 Pfam Phospholipase D Active site motif 345 383 IPR001736 GO:0003824
Cca10g00100 791 Pfam Phospholipase D Active site motif 638 664 IPR001736 GO:0003824
Cca10g00100 791 CDD C2_plant_PLD 2 147 - -
Cca10g00100 791 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 345 383 IPR001736 GO:0003824
Cca10g00100 791 PANTHER PHOSPHOLIPASE D 2 187 - -
Cca10g00100 791 SUPERFAMILY Phospholipase D/nuclease 181 448 - -
Cca10g00100 791 PANTHER PHOSPHOLIPASE D 451 791 IPR015679 -
Cca10g00100 791 PANTHER PHOSPHOLIPASE D 2 187 IPR015679 -
Cca10g00100 791 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 149 IPR035892 -
Cca10g00100 791 Gene3D Endonuclease Chain A 220 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00100 Cca-Chr10 1045368 1051005 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00100 1 791 Phospholipase D Gene Family (Wang group) AT3G15730 73.133 0.0 1270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00100 K01115 - gmx:100784434 1351.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00161 11 1947199 1952123 Cca10g00100 10 1045368 1051005 ECH
Cca10g00100 10 1045368 1051005 Cca10g00100 10 1045368 1051005 ECH