Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00095 ATGGTTTCTCTTCCATTCTTTTCTCGTCAGAAGCTTCGACTTTCGCACTACCAAAAACAACTTGGGGTTAGATTTTATCCAATCATTAAAATTGAAGCCAATGTCTCAACCATATCTTCACATGGAGAAAATGCAGAGAACTCATATGGACTCATAATTCCAGTAACCTGCCTAAGAACCTTCCTTCTAATATTTCTCTTACTCCTTCTGCACTCTAACATCGCTTCTGCTACTCAATGGAAAATAAGATATGAAATCATGGGCTCATTCAGAAGTGGGATCTTGTTTTTCTTTGTGTTACTTTTGTTTAGAACATGTCTGGCCAATGATCAACACATTCGTCAGATATATCCTGGCTTCAGTGCTTCTAGACCAGATTGGAGAGACCACAATGGTCTTTTCTTACTATCCAACAGCTCAGTTTTCGCTTTGGGGTTCTTAACTGCTCTTGATGTCTCATTGTTTGTTTTGGTTGTGATTCACTTAAGCAGCAACAAAGTGGTTTGGACTGCCAACAGAGGCTTACTCGTTGGAGATTCTGATAAATTTGTGTTTGACCATAGTGGTAATGCATATTTGGAAGGTGGGAATGGTGTAGTTTGGGCAACGAATACAACAGGACAAAAAGTAAAAGCCATGGAGTTGCTTGACTCAGGGAATTTGGTGTTGCTTGGGGAAAATGGAACAACTATTTGGCAAAGTTTTAGCCACCCCACTGATACTCTTTTGCCAGGGCAAGCCTTTGTGGAAGGAATGAGTCTCAAAAGCTTCCACAACAGCATGAACTTGTGTCATTATCTTAGTTATATGAAAGGTGATTTGGTTCTCTATGCAGGATTTGAAACTCCACAAGTGTACTGGTCCCTGTCAGAAGAAGTCTATAGAAATAGAAGCTCAAAAAATAACACTGCTAAGGTTCACTCGTTGTCTTTGGTGAACAATTCTTGGTGCTTTTATGACATGAATGGGGGTTTGTTGTGGAAAACTGTGTTCTCTGAACACTCAGATTCCAAGTCTTTGTGGTCTGCTACCTTGGATCCAAATGGTGCAATCTCCTTTTATGATCTCAACAAAGGGAGGTCTCATAACCCTGAAGCAGTTAAGGTGCCACAAGACCCTTGTGGCATTCCGGAGCCTTGTGATCCTTACTATGTTTGCTTCTTTGAAAACTGGTGTGTGTGCCCTGGACCTCTCAAACCTTTTAATTGCAAACCTCCCAATATCACAACCTGTTCCAAGAGTTCAACAGAACTTGTGTTTGTTGGAGAGGAGCTTGATTATTTTGCTCTCAAGTACACTGCACCGGTTTCAAAATCAAACCTGAATTCATGCAAAGAGGCTTGTTTAGGAAACTGCTCATGCCTTGTGCTTTTCTTTGAAAACAGCACTGGAAGATGCTTTCATTTTCATGAGACTGGGAGTTTCCAACGCTCTAGGGGGGGCACTGGTGGCTATGTTTCATTCATGAAGATTTCAATTGATGGTGATGGACATGGCAACAGAAATGGTAGGAATGACACGGTGCTAGTTGTTGTCATAGTAGTTCTCACAGTTCTTGTTATAGTTGGTCTTATAACAGGATTCTGGTACTACTATAAGAAAAAGAAGAATGTTGCTAAGTATCCTTTTGAAGACACTTTGGAGGAAGATGATTTCTTGGACGGTCTCTCTGGTATGCCTGCTCGTTTTACTTTTAGTGCTCTTTGTAGAgcaactaaggatttctccacaaaaattggagaaggagggtttggctcagtgtatctaggtgtgcttgaagatgaaactcaattggctgtgaaaaaattggaaggtgttggacaaggtgcaaaagagttcaaagcagaagtgtctataattggaagtattcatcatgttcatttggtgaagctcaaaggcttctgtgctgagggtcctcatcgccttcttgtctatgaatacatgtcaaggggttccttggacaaatggatcttcaagaacagtgagaacactttcttgttgaactgggacacaaggtacaacattgcaataggcactgcaaaagggttggcctatcttcatgaggagtgtgaagtgaggatcatccactgtgatatcaagccacaaaatgttcttcttgatgataacttcactgccaaggtttctgattttggattggccaaactaatgagccgagagcagagccatgtgttcacaactctaagaggcacaagaggatatctagcaccagaatggatcactaactatgcaatttcggagaagagtgatgtgttcagctatggcatgttgttgcttgagatagttggagggaggaagaactATGATCAATGGGAAGGAGCAGAGAAGGCACATTTTCCTTCTTATGTGTTCAGAATGATGGAGGAAGGGAAACTGAAAGAGGTTCTTGATCCAAAGATAGATATTGATGAGAAGGATGAAAGGGTTGTAGTTGCTCTAAAAGTTGCTCTTTGGTGCATACAGGATGATGTGAATTTGAGGCCTTCCATGACTAAGGTAACTCAAATGCTTGAAGGTTTGTGCCTTGTGCCTGATCCACCCTCATTATCTCAATCAGGTACATTTTCAGCTTTCATGAAATTGAGTAGTGGAGAAGCTACTAATTCATCGGGACAGGCTAGTTTTTTTAGTAATGTACCCATGTCGTGTGTTCAATTATCAGGACCAAGATGA 2691 0.3151 MVSLPFFSRQKLRLSHYQKQLGVRFYPIIKIEANVSTISSHGENAENSYGLIIPVTCLRTFLLIFLLLLLHSNIASATQWKIRYEIMGSFRSGILFFFVLLLFRTCLANDQHIRQIYPGFSASRPDWRDHNGLFLLSNSSVFALGFLTALDVSLFVLVVIHLSSNKVVWTANRGLLVGDSDKFVFDHSGNAYLEGGNGVVWATNTTGQKVKAMELLDSGNLVLLGENGTTIWQSFSHPTDTLLPGQAFVEGMSLKSFHNSMNLCHYLSYMKGDLVLYAGFETPQVYWSLSEEVYRNRSSKNNTAKVHSLSLVNNSWCFYDMNGGLLWKTVFSEHSDSKSLWSATLDPNGAISFYDLNKGRSHNPEAVKVPQDPCGIPEPCDPYYVCFFENWCVCPGPLKPFNCKPPNITTCSKSSTELVFVGEELDYFALKYTAPVSKSNLNSCKEACLGNCSCLVLFFENSTGRCFHFHETGSFQRSRGGTGGYVSFMKISIDGDGHGNRNGRNDTVLVVVIVVLTVLVIVGLITGFWYYYKKKKNVAKYPFEDTLEEDDFLDGLSGMPARFTFSALCRATKDFSTKIGEGGFGSVYLGVLEDETQLAVKKLEGVGQGAKEFKAEVSIIGSIHHVHLVKLKGFCAEGPHRLLVYEYMSRGSLDKWIFKNSENTFLLNWDTRYNIAIGTAKGLAYLHEECEVRIIHCDIKPQNVLLDDNFTAKVSDFGLAKLMSREQSHVFTTLRGTRGYLAPEWITNYAISEKSDVFSYGMLLLEIVGGRKNYDQWEGAEKAHFPSYVFRMMEEGKLKEVLDPKIDIDEKDERVVVALKVALWCIQDDVNLRPSMTKVTQMLEGLCLVPDPPSLSQSGTFSAFMKLSSGEATNSSGQASFFSNVPMSCVQLSGPR 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00095 896 ProSiteProfiles PAN/Apple domain profile. 411 492 IPR003609 -
Cca10g00095 896 ProSitePatterns Serine/Threonine protein kinases active-site signature. 694 706 IPR008271 GO:0004672|GO:0006468
Cca10g00095 896 PIRSF SRK 87 893 IPR024171 GO:0004674
Cca10g00095 896 CDD STKc_IRAK 579 846 - -
Cca10g00095 896 SUPERFAMILY alpha-D-mannose-specific plant lectins 164 289 IPR036426 -
Cca10g00095 896 Gene3D Transferase(Phosphotransferase) domain 1 648 847 - -
Cca10g00095 896 Pfam D-mannose binding lectin 167 248 IPR001480 -
Cca10g00095 896 Gene3D - 129 237 IPR036426 -
Cca10g00095 896 ProSitePatterns Protein kinases ATP-binding region signature. 579 602 IPR017441 GO:0005524
Cca10g00095 896 ProSiteProfiles Protein kinase domain profile. 573 846 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00095 896 SUPERFAMILY Protein kinase-like (PK-like) 558 844 IPR011009 -
Cca10g00095 896 CDD B_lectin 131 238 IPR001480 -
Cca10g00095 896 SMART serkin_6 573 843 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00095 896 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE SD2-5 88 896 - -
Cca10g00095 896 SMART blect_4 126 238 IPR001480 -
Cca10g00095 896 Pfam Protein kinase domain 576 841 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00095 896 ProSiteProfiles Bulb-type lectin domain profile. 120 236 IPR001480 -
Cca10g00095 896 CDD PAN_AP_plant 410 492 - -
Cca10g00095 896 Gene3D Phosphorylase Kinase; domain 1 547 647 - -
Cca10g00095 896 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 88 896 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00095 Cca-Chr10 1002555 1007394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00095 512 853 Receptor kinase-like Gene Family AT5G20050 43.767 1.07e-87 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Cca10g00095 Pkinase 1.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00095 - - gmx:100786024 1410.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00095 10 1002555 1007394 Cca10g00095 10 1002555 1007394 ECH