Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00089 ATGGCTTTTTGCCCAATTTTTTGTTGCGGAAATGGTTCGGATCGCAAAGGACGAGGGAAGAAACAACCTCCATGGAGAGTGTTTTCTTTGAAGGAATTACACTCTGCTACAAATAATTTCAACTATGATAACAAGCTTGGCGAAGGAGGATTCGGCAGTGTTTACTGGGGCCAGCTTTGGGATGGATCACAAATTGCAGTGAAAAGATTGAAAGTATGGAGCAACAAAGCAGACATGGAATTTGCTGTTGAAGTTGAGATATTGGCTAGAGTACGACACAAGAATCTTCTCAGTCTACGTGGCTATTGTGCTGAAGGTCAAGAACGGTTAATTGTGTATGATTATATGCCTAATTTGAGCCTGCTCTCTCATCTTCATGGACAGCACTCAGCAGAATGCCTTCTTGATTGGAACCGGCGGATGAATATTGCAATTGGGTCTGCTGAGGGAATTGCATATCTTCACCACCAGTCAACACCACACATCATCCACAGAGATATCAAGGCAAGCAATGTGTTGTTGGATTCGGATTTTCAGGCCCGGGTAGCTGATTTTGGTTTTGCAAAGTTGATCCCTGATGGGGCAACACATGTGACTACAAGAGTTAAGGGCACACTAGGTTACCTTGCACCAGAATATGCTATGTTAGGTAAAGCAAATGAGAGTTGTGATGTCTACAGTTTCGGAATTCTCCTTTTAGAACTTGCTAGTGGCAAAAAACCACTTGAAAAACTTAGTTCTACAGTGAAGCGATCAATAAATGATTGGGCACTGCCACTGGCTTGTGAGAAGAAATTCAGTGAACTAGCAGATCCAAAACTTGAGGGTAACTATGTGGAGGAAGAGCTTAAAAAAGTTGTTTTAATTGCTCTGGTATGTGCTCAGAGTCAACCAGAGAAGAGACCTACCATACTTGAGGTGGTAGAGTTACTGAAGGGAGTATCCAAAGAAAAGTTAGCTCAGCTGGAAAATAATGAACTCTTTAAAAGCCCTCCAGCTGTAGGACATACTGAAGATGGGACCCTTGCTGCTGAAGGCAGCTCAGATTTCATCTCAGAAGAGAAGGAATCAAAACCTGAGTTGGAAGAGAATACTGAGCCATGA 1104 0.4266 MAFCPIFCCGNGSDRKGRGKKQPPWRVFSLKELHSATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSNKADMEFAVEVEILARVRHKNLLSLRGYCAEGQERLIVYDYMPNLSLLSHLHGQHSAECLLDWNRRMNIAIGSAEGIAYLHHQSTPHIIHRDIKASNVLLDSDFQARVADFGFAKLIPDGATHVTTRVKGTLGYLAPEYAMLGKANESCDVYSFGILLLELASGKKPLEKLSSTVKRSINDWALPLACEKKFSELADPKLEGNYVEEELKKVVLIALVCAQSQPEKRPTILEVVELLKGVSKEKLAQLENNELFKSPPAVGHTEDGTLAAEGSSDFISEEKESKPELEENTEP 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00089 367 Gene3D Phosphorylase Kinase; domain 1 13 115 - -
Cca10g00089 367 Pfam Protein kinase domain 41 308 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00089 367 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Cca10g00089 367 PANTHER OS01G0750732 PROTEIN 1 364 - -
Cca10g00089 367 MobiDBLite consensus disorder prediction 349 367 - -
Cca10g00089 367 Gene3D Transferase(Phosphotransferase) domain 1 116 328 - -
Cca10g00089 367 MobiDBLite consensus disorder prediction 327 367 - -
Cca10g00089 367 ProSiteProfiles Protein kinase domain profile. 40 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00089 367 PANTHER BNAA05G14800D PROTEIN 1 364 - -
Cca10g00089 367 ProSitePatterns Protein kinases ATP-binding region signature. 46 68 IPR017441 GO:0005524
Cca10g00089 367 SUPERFAMILY Protein kinase-like (PK-like) 22 311 IPR011009 -
Cca10g00089 367 SMART serkin_6 40 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00089 Cca-Chr10 965073 968515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00089 28 311 Trihelix Transcription Factor Family AT1G70460 51.042 1.00e-93 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Cca10g00089 Pkinase 4.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00089 - - gmx:100788153 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00089 10 965073 968515 Cca10g00089 10 965073 968515 ECH
Cca10g00089 10 965073 968515 Cca11g00144 11 1776966 1780535 PCT