Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00084 ATGGCCGTTACATCCCTCTCTCTTCTCCCTCCCTCCACGTGTCCCTGCTTCTGTGGCGCCATCCATCTCCGCTCCCACAACGCCTTCATTTCCCTTAACTCCTCTTCTCCCTTTCCCTCTTTCTCCACAATTCCAAATCCCAATCACGCTCCCACGCGCCGCCGCTCTCACACTGTCCTCGCCGCCTCCTCTGACTACTACACCACTCTCGGAGTCCCCAAATCCGCCTCCGGCAAGGAAATCAAAGCCGCCTATCGAAGGTTAGCTCGTCAGTACCATCCCGACGTAAACAAGGAGCCCGGGGCAACTGAAAAGTTCAAAGAGATCAGTGCTGCTTATGAGGTGCTATCAGACGATAAAAAGAGGGCTTTATATGATCAATATGGCGAGGCGGGAGTTAAGAGTGCAGTTGGAGGAGGGTCAAGTGCCTATACGACAAATCCTTTTGATTTATTTGAGACATTTTTTGGGCCAAGCATGGGTGGCTTTGCAGGCATGGATCCAACTGGATTTGGAACTCGTCGTCGTAGTACAGTTACTAAGGGTGAAGACATCCGGTATGATTTTTCCTTGGAGTTTTCTGAGGCAATTTTTGGAACAGAGAAAGAATTCGAGCTTTCTCATTTAGAAACATGTGAAGTCTGTACTGGTACTGGAGCAAAGATAGGCTCCAAGATGAGAGTATGTTCAACATGTGGTGGGAGGGGTCAGGTGATGAGGACCGAACAAACACCTTTTGGGTTGTTCTCTCAGGTTTCTGTATGTCCAAACTGTGGAGGGGATGGTGAAGTCATATCTGAATATTGTCGTAAATGCAATGGTGAAGGACGAATACGGGTTAAGAAAAATATTAAAGTTAAAGTTCCTCCTGGTGTTAGCTCAGGCAGTATTCTAAGAGTTTCTGGGGAGGGTGATGCTGGACCTAGAGGGGGCCCTCCTGGAGATCTTTATGTATATCTTGATGTTCAAGAGATACCTGGAATACAAAGAGATGACATTAATCTCAGCTCAACAATATCAATCAGTTATCTAGATGCTATACTGGGGACTGTTGTGAAGGTAAAGACAGTGGAAGGCATTTCAGAACTACAAATACCCGCTGGTACCCAACCTGGAGATGTCCTTGTCCTTGCAAGAAAAGGAGTACCAAAATTAAATAAGCCATCAATACGTGGTGACCACTTATTTACAGTTAAAGTTACAATACCAAAACGTATTAGTACAAAGGAGCGTGAGTTGCTTGAAGAACTTTCTTCTTTAGGTGACACAGGCAGACGTTCCAAATCCCGTCCTAGGACTCATTCTACCACAGGTGGTACGGAAGGTCCTGCATCTCAAAATTACGAAACTCCAACAGCAACCGTTGAAGAAAAAACCGAAAAACCAGAAGATGAAAATGATGTATGGAATAAATTGAAGGACTTTGCTGGATCTGTGGCAAATGGTGCTTTAAAGTGGCTAAAAGATAACCTCTAG 1476 0.4539 MAVTSLSLLPPSTCPCFCGAIHLRSHNAFISLNSSSPFPSFSTIPNPNHAPTRRRSHTVLAASSDYYTTLGVPKSASGKEIKAAYRRLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRALYDQYGEAGVKSAVGGGSSAYTTNPFDLFETFFGPSMGGFAGMDPTGFGTRRRSTVTKGEDIRYDFSLEFSEAIFGTEKEFELSHLETCEVCTGTGAKIGSKMRVCSTCGGRGQVMRTEQTPFGLFSQVSVCPNCGGDGEVISEYCRKCNGEGRIRVKKNIKVKVPPGVSSGSILRVSGEGDAGPRGGPPGDLYVYLDVQEIPGIQRDDINLSSTISISYLDAILGTVVKVKTVEGISELQIPAGTQPGDVLVLARKGVPKLNKPSIRGDHLFTVKVTIPKRISTKERELLEELSSLGDTGRRSKSRPRTHSTTGGTEGPASQNYETPTATVEEKTEKPEDENDVWNKLKDFAGSVANGALKWLKDNL 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00084 491 Pfam DnaJ domain 65 126 IPR001623 -
Cca10g00084 491 MobiDBLite consensus disorder prediction 433 453 - -
Cca10g00084 491 Gene3D - 328 419 - -
Cca10g00084 491 Hamap Chaperone protein DnaJ [dnaJ]. 62 475 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Cca10g00084 491 SMART dnaj_3 64 121 IPR001623 -
Cca10g00084 491 ProSiteProfiles dnaJ domain profile. 65 129 IPR001623 -
Cca10g00084 491 Gene3D - 212 276 - -
Cca10g00084 491 Pfam DnaJ central domain 212 276 IPR001305 GO:0031072|GO:0051082
Cca10g00084 491 CDD DnaJ_zf 212 276 IPR001305 GO:0031072|GO:0051082
Cca10g00084 491 ProSiteProfiles Zinc finger CR-type profile. 199 281 IPR001305 GO:0031072|GO:0051082
Cca10g00084 491 SUPERFAMILY HSP40/DnaJ peptide-binding domain 180 323 IPR008971 GO:0006457|GO:0051082
Cca10g00084 491 MobiDBLite consensus disorder prediction 417 468 - -
Cca10g00084 491 CDD DnaJ_C 183 406 - -
Cca10g00084 491 TIGRFAM DnaJ_bact: chaperone protein DnaJ 65 419 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Cca10g00084 491 SUPERFAMILY Chaperone J-domain 61 171 IPR036869 -
Cca10g00084 491 ProSitePatterns Nt-dnaJ domain signature. 106 125 IPR018253 -
Cca10g00084 491 Gene3D - 182 318 - -
Cca10g00084 491 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 52 430 - -
Cca10g00084 491 MobiDBLite consensus disorder prediction 454 468 - -
Cca10g00084 491 Coils Coil 484 491 - -
Cca10g00084 491 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 199 279 IPR036410 -
Cca10g00084 491 PANTHER MOLECULAR CHAPERONE HSP40/DNAJ FAMILY PROTEIN 52 430 - -
Cca10g00084 491 PRINTS DnaJ domain signature 67 85 IPR001623 -
Cca10g00084 491 PRINTS DnaJ domain signature 85 100 IPR001623 -
Cca10g00084 491 PRINTS DnaJ domain signature 101 121 IPR001623 -
Cca10g00084 491 PRINTS DnaJ domain signature 121 140 IPR001623 -
Cca10g00084 491 Pfam DnaJ C terminal domain 185 403 IPR002939 -
Cca10g00084 491 CDD DnaJ 65 118 IPR001623 -
Cca10g00084 491 Gene3D DnaJ domain 62 167 IPR036869 -
Cca10g00084 491 SUPERFAMILY HSP40/DnaJ peptide-binding domain 329 414 IPR008971 GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00084 Cca-Chr10 932113 939731 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00084 66 172 C2H2 Transcription Factor Family AT1G74250 38.596 5.30e-11 63.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00084 10 932113 939731 Cca10g00084 10 932113 939731 ECH