Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00078 ATGGGTGCGTCGTTGCTGTCGGAGCTTGCAACGGAGATAGTGGTGCCGGTGTGCGCGGTGGTGGGGATTGTGTTCTCGTTGGTGCAATGGTACCTCGTGTCGCGCGTGAAGCTCACACCGGAGCGCCACGGTCCCTCGTCTTCCCCGCGCAACGACAACGGCAACAACAAGAACGGTTACGGAGACTACCTGATTGAGGAAGAGGAAGGCATCAATGACCATAACGTTGTTGTCAAATGCGCTGAAATACAGAACGCCATCTCCGAAGGTGCAACATCCTTTCTCTTCACTGAATATCAATATGTGGGGGTTTTCATGGTTGCTTTTGCAATTTTAATCTTCCTTTTCCTGGGCTCTGTGGAGAGCTTTAGCACCAAGAACCAGCCCTGCACGTATGACAAGGGGAGGATGTGTAAACCAGCCCTTGCAACTGCACTCTTTAGCACTGTATCTTTCCTGCTTGGTGCTATAACCTCAGTTCTATCTGGCTACCTTGGGATGAAAATTGCTACCTATGCCAATGCAAGGACAACCTTGGAGGCAAGAAAGGGAGTTGGAAAGGCATTTATTACTGCATTTAGATCTGGTGCAGTAATGGGTTTCCTTCTTGCAGCAAATGGTCTATTGGTGCTGTACATTGCCATCAATCTCTTCAAGCTATATTATGGTGATGACTGGGAAGGCCTTTTTGAGGCTATAACTGGGTATGGTCTGGGTGGGTCTTCCATGGCTCTGTTTGGGAGAGTTGGAGGTGGTATCTATACCAAGGCCGCCGATGTTGGAGCTGATCTGGTTGGAAAAGTTGAAAGAAATATCCCAGAGGATGATCCAAGAAACCCAGCTGTGATTGCTGACAATGTTGGTGATAATGTTGGAGATATTGCTGGGATGGGTTCTGATCTTTTTGGTTCGTATGCTGAATCATCCTGTGCTGCCCTAGTTGTTGCTTCAATTTCCTCATTTGGAATCAACCATGATTTCACTGCCATGTTATATCCCTTACTTATCAGTTCTATGGGTATTCTTGTTTGTTTGATCACTACTCTATTTGCAACTGATTTCTTTGAGATCAAGGCAGTCAAGGAAATTGAACCAGCATTGAAAAAACAGCTTATCATCTCAACTGTTCTGATGACTGTTGGAATTGCAATTATTAGTTTTATTGCCCTTCCATCTTCCTTCACAATTTTCAACTTTGGGGCTCAGAAAGAAGTGAAGAGCTGGCAGCTGTTCTTATGTGTGGGTGTTGGTCTTTGGGCTGGACTTATTATTGGCTTTGTGACTGAATATTATACAAGCAATGCTTACAGCCCAGTACAAGATGTTGCAGATTCTTGCCGAACTGGAGCTGCAACTAATGTTATCTTTGGCCTTGCTCTGGGATACAAGTCTGTCATTATTCCTATTTTTGCCATTGCAGTCAGCATTTTTGTGAGTTTTAGTTTTGCAGCAATGTATGGTATTGCTGTAGCTGCCCTCGGGATGCTTAGCACCATTGCTACTGGGTTGGCTATTGATGCCTATGGGCCTATTAGTGACAATGCAGGAGGTATTGCTGAGATGGCAGGCATGAGCCATCGTATCCGTGAGAGAACTGATGCCCTTGATGCTGCTGGCAACACTACTGCTGCCATTGGCAAGGGATTTGCTATTGGGTCCGCTGCACTAGTGTCTCTGGCCTTATTTGGTGCCTTTGTCAGCCGGGCAGGAATTTCAACAGTAGATGTCTTGACTCCCAAGGTCTTCATTGGACTCATAGTTGGTGCCATGCTTCCTTACTGGTTTTCGGCCATGACCATGAAGAGTGTAGGAAGTGCAGCTTTGAAGATGGTTGAGGAGGTTCGTAGGCAGTTTAACACCATTCCCGGACTCATGGAGGGTCATGCCAAGCCTGATTATGCTACCTGTGTCAAGATTTCAACTGATGCATCAATTAAGGAGATGATTCCTCCAGGAGCCCTTGTCATGCTTACACCACTTATCGTTGGTATCCTTTTTGGCGTAGAAACTCTTTCAGGTGTTCTTGCTGGCTCTCTAGTTTCTGGTGTGCAGATCGCAATATCAGCATCTAACACCGGTGGTGCCTGGGATAACGCAAAGAAGTACATTGAGGCCGGTGCTTCTGAACATGCCCGGACATTGGGCCCAAAGGGATCTGAACCACACAAAGCAGCTGTTATTGGTGACACCATTGGAGACCCTCTTAAGGATACTTCGGGCCCTTCCCTCAACATCCTTATTAAGCTCATGGCGGTTGAATCGCTTGTTTTTGCTCCCTTTTTCGCTACCCATGGAGGCTTGCTTTTTAAGATCTTTTAA 2319 0.4636 MGASLLSELATEIVVPVCAVVGIVFSLVQWYLVSRVKLTPERHGPSSSPRNDNGNNKNGYGDYLIEEEEGINDHNVVVKCAEIQNAISEGATSFLFTEYQYVGVFMVAFAILIFLFLGSVESFSTKNQPCTYDKGRMCKPALATALFSTVSFLLGAITSVLSGYLGMKIATYANARTTLEARKGVGKAFITAFRSGAVMGFLLAANGLLVLYIAINLFKLYYGDDWEGLFEAITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGKVERNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAESSCAALVVASISSFGINHDFTAMLYPLLISSMGILVCLITTLFATDFFEIKAVKEIEPALKKQLIISTVLMTVGIAIISFIALPSSFTIFNFGAQKEVKSWQLFLCVGVGLWAGLIIGFVTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIAVSIFVSFSFAAMYGIAVAALGMLSTIATGLAIDAYGPISDNAGGIAEMAGMSHRIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRAGISTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAALKMVEEVRRQFNTIPGLMEGHAKPDYATCVKISTDASIKEMIPPGALVMLTPLIVGILFGVETLSGVLAGSLVSGVQIAISASNTGGAWDNAKKYIEAGASEHARTLGPKGSEPHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFATHGGLLFKIF 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00078 772 TIGRFAM V_PPase: V-type H(+)-translocating pyrophosphatase 10 767 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Cca10g00078 772 Pfam Inorganic H+ pyrophosphatase 43 757 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Cca10g00078 772 PIRSF H+-PPtase 7 770 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Cca10g00078 772 PANTHER K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP 1 772 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Cca10g00078 772 Hamap Putative K(+)-stimulated pyrophosphate-energized sodium pump [hppA]. 9 762 IPR004131 GO:0004427|GO:0009678|GO:0016020|GO:1902600
Cca10g00078 772 MobiDBLite consensus disorder prediction 40 59 - -
Cca10g00078 772 PANTHER PYROPHOSPHATE-ENERGIZED VACUOLAR MEMBRANE PROTON PUMP-LIKE 1 772 - -
Cca10g00078 772 MobiDBLite consensus disorder prediction 44 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00078 Cca-Chr10 857574 864392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00078 4 635 Primary Pumps ATPases AT1G15690 88.766 0.0 1132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00078 K23025 - gmx:100803691 1438.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00078 10 857574 864392 Cca10g00078 10 857574 864392 ECH