Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00071 ATGGATCGAGAATGGGGATCGAAGCCGGGGAGCGGCGGCGCGGCGTCGGCGCAGAACGAAGCGATCGACCGGCGAGAGCGTCTCCGGCGACTGGCTCTGGAGACGATAGACCTGGCGAAGGACCCTTACTTCATGCGCAACCACCTCGGGAGCTACGAATGCAAGCTCTGCCTCACTCTTCACAACAACGAGGGAAACTACTTGGCCCACACTCAGGGCAAACGCCACCAGACCAATTTGGCCAAACGCGCCGCTCGCGAGGCCAAGGACGCCCCCGCTCAGCCCCAGCCTCACAAGCGCAAAGTCTCGCTTCGCAAAACAGTTAAGATTGGACGCCCTGGCTACCGTGTCACCAAGCAGTATGATCCCGAGACCAAGCAAAGATCTCTCCTATTTCAGATTGAATATCCTGAGATTGAAGACCTAACCAAGCCCAGGCACCGCTTTATGTCTTCATACGAGCAGAGGGTACAACCGTTCGACAAAAGATATCAGTATCTTTTGTTTGCAGCTGAACCGTATGAAATTGTTGCTTTCAAGGTGCCTAGCACGGAGATTGATAAGTCTACTCCTAAGTTTTTCTCGCACTGGGATCCAGACTCAAAGATGTTCACGCTGCAATTGTATTTTAAGTCCAAGCCGCCAGAGGCTAACAAACCACCACAGCCTGCTTCTGCAGCCAATGGCACAGCAGCACCTGGTGCTCCACCAAGGCCTTTGcccccaccaccccaagctccactgccaccacctccacctcctccacAAGGGCTACCTCCTGGTGCACCTATGGCAAATCCTCCTAGAGCTCCTCCACCTCCAATGCCGGGATCAATGCCACCTCCTCCTCCTATGGCAGCTAATGGTCCTAGACCTGTGCCTTCTGGCGGAATGCCATCTGTCCCACCCCCACCCCCTGTTGCCAGTGGGACAGCTGGTTTCAACATGGGTGGTAGACCTCCATCAATGCCACCTCCACAAGGTTTTCCTTCGCAACCAATGCAGAACCAGGGTGTTCGTCTTCCTCCACCACCCCCTAATATGGGACAGTAG 1053 0.5242 MDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPAQPQPHKRKVSLRKTVKIGRPGYRVTKQYDPETKQRSLLFQIEYPEIEDLTKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIVAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPPEANKPPQPASAANGTAAPGAPPRPLPPPPQAPLPPPPPPPQGLPPGAPMANPPRAPPPPMPGSMPPPPPMAANGPRPVPSGGMPSVPPPPPVASGTAGFNMGGRPPSMPPPQGFPSQPMQNQGVRLPPPPPNMGQ 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00071 350 SMART CactinC_cactus_3 89 217 - -
Cca10g00071 350 SUPERFAMILY beta-beta-alpha zinc fingers 48 82 IPR036236 -
Cca10g00071 350 SMART ZnF_U1_5 49 83 IPR003604 GO:0003676|GO:0008270
Cca10g00071 350 MobiDBLite consensus disorder prediction 212 350 - -
Cca10g00071 350 Gene3D Classic Zinc Finger 46 89 - -
Cca10g00071 350 ProSiteProfiles Zinc finger matrin-type profile. 52 82 IPR000690 GO:0003676|GO:0005634|GO:0008270
Cca10g00071 350 Pfam Zinc-finger of C2H2 type 52 76 - -
Cca10g00071 350 MobiDBLite consensus disorder prediction 234 309 - -
Cca10g00071 350 Gene3D - 94 218 - -
Cca10g00071 350 PANTHER SPLICING FACTOR 3A SUBUNIT 2 1 342 - -
Cca10g00071 350 MobiDBLite consensus disorder prediction 319 350 - -
Cca10g00071 350 MobiDBLite consensus disorder prediction 1 21 - -
Cca10g00071 350 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 110 204 IPR031781 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00071 1 298 C2H2 Transcription Factor Family AT2G32600 75.251 7.19e-139 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00071 K12826 - gmx:100791333 437.958