Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00070 ATGTCTCACAGAAACGACACTAACACCTATTCTTCCTTACCCATCACCTCCTCCTACCTTGAATTGCAGCGCCAAACCGATTCCTCCAAATCCCCTTCTTTCGACGAAGCCGAGGTCTATTTGGGATCCAAGGTCGACGACGACGAAGACGATTTAGAAATCGACATCGATAACTATCCCCTCGTTGTTCCGGCTCCCACTCTGGGTTCTGGAGTACCCGGCGCTGTCTTCAATTTGACAACTACGATTATTGGTGCAGGGATTATGGCCCTTCCCGCCACCATGAAAGTTCTCGGAGTGGCTTTGGGGATTGTGTTGATTATCGTGATGGGAATTTTATCTGAAATTAGTGTCGAATTGTTGGTGAGGTTTTCCGTTATGTGTAAGGCATCCTCCTATGGTGAGGTTGTGCAACACGCCATGGGAAGGCCCGCGAGGGTTGTGTCGGAAATTTGTATAATTGTGAACAATGCTGGTGTTTTGGTCGTTTATTTGATTATCATGGGTGATGTTATGTCTGGTTCGGTTCACCACATGGGGGTTTTTGACCAGTTAATGGGGAATGGCGTTTGGGATCAGAGGAAGCTTGTTATTCTTGTTGTTATGGTGGTTTTCCTTGCTCCACTTTGTTCCCTTGACAAGATTGATTCGTTGAGTTTGACCTCAGCGGCGTCGGTGGCGCTTGCTGTGTTGTTTGTGATTGTTGCTTTCACTGTGGCTTTCATTAAGCTTGTTGAAGGGAAGGTTGATTCTCCCAGGATGGTTCCTGATCTCAGCTCAAAAAGCGCAATTTTGGATTTGCTTGTTGTGATTCCCATCATGACCAATGCATATGTTTGTCATTTCAATGTGCAGCCAATTTACAATGAGCTTGAGCAGCGTTCGCCGCAGAAGATGAACCGCGTTGGGAGGCTCACCACGGTTTTGTGCATCCTGGTGTACGCCTCCACAGCCATATCTGGTTACCTTCTGTTTGGGGTTGATACTGAGTCTGATGTGTTGACTAATTTTGATAAGGATCTTGGAGTTAGGTTTAGCTCTGCCATAAACTACATTGTTAGGGTAGGATACATTCTTCATTTGATACTTGTTTTCCCCGTGATTCATTTCTCCCTGCGCCAAACTGTGGATGCTTTAGTGTTTGAGGGATCACCTCCATTGTCAGAAAGTAGGAAGAGATCTCTTGGGTTGACTGTGGTTTTGTTGGTTCTCATATATATTGGGTCTACCATGATTCCAAGCATATGGACAGCTTTCAAGTTCACTGGGGCAACTACTGCTGTTTCATTGGGTTTTATATTTCCTTCACTTGTTTCATTGAGATTACGGCATCAGGGGGATTTAAGCCGTGGAGAATGGGTTTTATCATGGATAATGTTGGTATTGGCTGTGACTGTTAGCATAGTAGGTGTTGTTGGCAATATCTATAGCCTTGAGAGTAAGTCTTAG 1449 0.45 MSHRNDTNTYSSLPITSSYLELQRQTDSSKSPSFDEAEVYLGSKVDDDEDDLEIDIDNYPLVVPAPTLGSGVPGAVFNLTTTIIGAGIMALPATMKVLGVALGIVLIIVMGILSEISVELLVRFSVMCKASSYGEVVQHAMGRPARVVSEICIIVNNAGVLVVYLIIMGDVMSGSVHHMGVFDQLMGNGVWDQRKLVILVVMVVFLAPLCSLDKIDSLSLTSAASVALAVLFVIVAFTVAFIKLVEGKVDSPRMVPDLSSKSAILDLLVVIPIMTNAYVCHFNVQPIYNELEQRSPQKMNRVGRLTTVLCILVYASTAISGYLLFGVDTESDVLTNFDKDLGVRFSSAINYIVRVGYILHLILVFPVIHFSLRQTVDALVFEGSPPLSESRKRSLGLTVVLLVLIYIGSTMIPSIWTAFKFTGATTAVSLGFIFPSLVSLRLRHQGDLSRGEWVLSWIMLVLAVTVSIVGVVGNIYSLESKS 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00070 482 PANTHER AMINO ACID TRANSPORTER 45 481 - -
Cca10g00070 482 PANTHER AMINO ACID TRANSPORTER AVT6E 45 481 - -
Cca10g00070 482 Pfam Transmembrane amino acid transporter protein 71 473 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00070 Cca-Chr10 784330 786424 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00070 17 482 Amino Acid or Auxin Permease AAAP Family AT1G80510 72.141 0.0 657
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00070 - - gmx:100791860 801.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00070 10 784330 786424 Cca10g00070 10 784330 786424 ECH