Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00061 ATGTGGAGTTCAACTTCAAGCGCAGCGATTGAAGAGGAGGAGGAGGGTACGTGGTCGTCGAAGTCCTTGTTCAATTTCTCTTCTGGAAACCCTAGAATCGAGGAGACCCGGGGCCTGATGCATCTCTTCCCCCATGAAACCCGTTCCACTCTTCCCGTTGGACGAAAGCCTCTGGTCTGCGTTGTGGGCGTTCCTAATCACATGACCTATGCCGATTTCTGCCAGTTCTGCGGTTCCTTCATTCAGCACATGCTTGAGATGCGCATTGTGAGAATGGATGGAATGGAGGATCAGTACAGTGTCTTGATTCGCTTCGACCACCAGGACTCCACCGACGCCTTCTACAACCACTACAACGCCCGTCGTTTCTCTTCTCTCGAGGTTGAGGTTTGCCGTGTTCTTTTCACATTGGACGTCCAGTACACTGGCTCCATTGAACATGCACAACCCTCCAATGCCACTTCCACCGAACAGCCTACTTGTCCTGTTTGCCTTGAGCGATTAGATCAGGACACTAGTGGAATTCTTACTACCATTTGCAATCATTCTTTCCATTGCTCCTGTATTTCAAAATGGGCAGATTCTTCTTGTCCTGTATGCCGCTATTGCCAGCAGCAAGCTGAAAAATCTATCTGTTTTGTTTGTCAAACCACTGATAACCTCTGGATATGTGTTATATGTGGCCATGTTGGATGCGGAAGATACAAGGGGGGACATGCTATAATACACTGGAAAGAGACACAGCATTGCTATTCCCTTGAAGTGGAAACCAAACGTGTGTGGGATTACGTGGGAGACAACTACGTTCATAGACTTATTCAGTCCAAAACTGATGGTAAGTTGGTTGAGCTGAACGCTCAGTGTGCGCATGCAGACAAAGGATGCGGAAGTTGCAGCTGTGAAGATAATGCCATAAGCGAGGCTATGCTTAATAGTAAAGTTGAAGCTATTGTGAACGAGTACAATGAGTTGCTTGCTACTCAACTTGAAAACCAAAAATTATATTTTGAATCCTTATTACAAGAAGTAAAAGAAGAATCTGAAAGAAAAATTTCCAAAGCGGTTCAGAAGACTATCAGTCTTAAACAGCAGAAGATTCAGACCAAGATTGACAGATGTAAGAAAGAGAAGAAATTTCTGGATGATCTTAATGAGAATCTTGTGAAAAATGAGGAGATTTGGAAAACAAAGTTACTGGAGATTGAAGAGAGGGAGAAAAAAGTTACGAGACTGATGGATGATAGAGTAGTGGATCTGGAAAAGCAGCTTAGAGATCTCATGGTTTGTCTTGAGGGTGGGAAGATGGAAGAACAGCTACCCGTTACAGATGAGATTAAAGAAGGGACTGTCTTTGACAAACCAAAAGAATCCTCGTCAACTACTAACTAG 1389 0.4413 MWSSTSSAAIEEEEEGTWSSKSLFNFSSGNPRIEETRGLMHLFPHETRSTLPVGRKPLVCVVGVPNHMTYADFCQFCGSFIQHMLEMRIVRMDGMEDQYSVLIRFDHQDSTDAFYNHYNARRFSSLEVEVCRVLFTLDVQYTGSIEHAQPSNATSTEQPTCPVCLERLDQDTSGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSICFVCQTTDNLWICVICGHVGCGRYKGGHAIIHWKETQHCYSLEVETKRVWDYVGDNYVHRLIQSKTDGKLVELNAQCAHADKGCGSCSCEDNAISEAMLNSKVEAIVNEYNELLATQLENQKLYFESLLQEVKEESERKISKAVQKTISLKQQKIQTKIDRCKKEKKFLDDLNENLVKNEEIWKTKLLEIEEREKKVTRLMDDRVVDLEKQLRDLMVCLEGGKMEEQLPVTDEIKEGTVFDKPKESSSTTN 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00061 462 CDD RRM_BRAP2_like 59 140 - -
Cca10g00061 462 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 282 IPR013083 -
Cca10g00061 462 SUPERFAMILY RING/U-box 177 276 - -
Cca10g00061 462 SMART ring_2 161 200 IPR001841 -
Cca10g00061 462 Pfam BRCA1-associated protein 2 52 148 IPR011422 -
Cca10g00061 462 Pfam Zn-finger in ubiquitin-hydrolases and other protein 212 271 IPR001607 GO:0008270
Cca10g00061 462 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 202 IPR013083 -
Cca10g00061 462 Pfam Ring finger domain 160 201 IPR001841 -
Cca10g00061 462 PANTHER BRCA1-ASSOCIATED PROTEIN 9 459 - -
Cca10g00061 462 SMART Zf_UBP_1 211 260 IPR001607 GO:0008270
Cca10g00061 462 Coils Coil 370 390 - -
Cca10g00061 462 Coils Coil 326 346 - -
Cca10g00061 462 CDD RING-H2_BRAP2 159 202 - -
Cca10g00061 462 ProSiteProfiles Zinc finger RING-type profile. 161 201 IPR001841 -
Cca10g00061 462 ProSiteProfiles Zinc finger UBP-type profile. 195 288 IPR001607 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00061 Cca-Chr10 729732 732671 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00061 157 201 C3H Transcription Factor Family AT1G72220 48.936 2.54e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00061 K10632 - gmx:100794688 837.41