Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00059 ATGGAAGAGATTCGGCAGGAAAATTGGTCCTCCGATATGGAAATGGATGATCATGAGGTGAATGAATGTTTGTGCCACGCGAACCCCTTTGATGAAGAGTTCCTGAGAGAGATTCTGCCGCAGCCACAAGAGGCCCTTGTTACTACGCCAACCTCATCTCAATATGCTGAAGATCACAAGCCAATTACCTCATCTGCAACCACTTATATTCTGTCTTTCGAAAAATCCGCTGCATTGTTACCAGCTGATCCAGATTCTTGCTCTGCATGGAAAGAGAACTCGCAATCCCAATTGCTCAAAGAAATCTTGCCCTTGCCCTCATCGAGGGTCAACCAAGGAACCAAGAAGACTCGAAGCGCTTCTGAGTCATTAGATCACCTAATGTCTGAGAGAAATAGGAGACAGGAGCTCACAAGGAAGTTCATAGCACTTGCAGCCACTATCCCTGGCTTGAAGAAGATGGACAAGGCCCACGTACTAAGAGAAGCAATCAATTACGTGAAACAACTTCAAGAACGTGTAGACGAGTTAGAAGAAGATATTCAGAAGAATGATGTTGAATCAGCGATAACCATAACAAAATCTCATCTTTGCGTTGATGATAAATGCAATGATTTAGCACTTGTTGAAGTTGAAGCCAGAGTCTTGGGGAAGGAGGTGTTAATCAAAATTCACTGTGCCAAACAAAAGGGAGTTTTGCTTAAAATAATGTCTCAGCTTGAACGCCTTCATCTCTACATATCCACTAGCAATGTCTTGCCATTTGGGAATACCCTTGACATCACCATTATTGCTCAGATGGGTGAGAAATACAAGTTGGTAATGAAGGATCTAGTGAAAGAATTGAGACAAGTGGCTATGAATGAGGCCATGTGA 876 0.4292 MEEIRQENWSSDMEMDDHEVNECLCHANPFDEEFLREILPQPQEALVTTPTSSQYAEDHKPITSSATTYILSFEKSAALLPADPDSCSAWKENSQSQLLKEILPLPSSRVNQGTKKTRSASESLDHLMSERNRRQELTRKFIALAATIPGLKKMDKAHVLREAINYVKQLQERVDELEEDIQKNDVESAITITKSHLCVDDKCNDLALVEVEARVLGKEVLIKIHCAKQKGVLLKIMSQLERLHLYISTSNVLPFGNTLDITIIAQMGEKYKLVMKDLVKELRQVAMNEAM 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00059 291 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 21 289 - -
Cca10g00059 291 Gene3D - 111 186 IPR036638 GO:0046983
Cca10g00059 291 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 121 170 IPR011598 GO:0046983
Cca10g00059 291 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 126 183 IPR036638 GO:0046983
Cca10g00059 291 Coils Coil 160 187 - -
Cca10g00059 291 SMART finulus 127 176 IPR011598 GO:0046983
Cca10g00059 291 Pfam Helix-loop-helix DNA-binding domain 126 171 IPR011598 GO:0046983
Cca10g00059 291 PANTHER BHLH TRANSCRIPTION FACTOR 21 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00059 Cca-Chr10 719815 722082 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00059 112 288 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 46.354 7.46e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca10g00059 HLH 1.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00059 - - aprc:113854852 391.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00059 10 719815 722082 Cca11g00121 11 1427747 1433769 PCT