Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00058 ATGGAGGAATCATGGGAAAATTGGGCTCTTGACATGGAAATGGAATATGATAGGGATCTGTTAGAGGAGTGGCTGAGCGAGGTGGAGGAGGAAGAGTTCCTGAGAGAGATTCTGAGTCAACCGGCTTTATCATCGGAGAGTGAAAGTCAACCTTTTGTTGAGAAGAGGGTTGGCGGAGACGGAAGCAGTTTATCCTCGGATGAGACGGTTACTGTTGGGCCTGGGAAAAGGGCCCCCAGGTCCAGCTCCAGCTCCAGGGCATACATTTTGTCTTTCGATAACTCTACCATAATACCCGCAACACCTGAACTCCAACTCCATGCTAATAATTGCCATGGAGGAACACGCAATTCCAATTTGGCCTCCAAAAAACCAAAACAAGGCAAGAGGGGTAGAACTGGCTCGCAGACTCTGGATCACATAATGGCAGAAAGGAAAAGGAGACAACAACTCACCGAGAGGTTCATAGCACTTTCAGCAACTATTCCTGGTTTGAAGAAGACGGACAAGAGTTCTATACTTTGCGAGGCAATTAATTATGTGAAACAACTTCAAGAACGTGTGACGGAGCTAGAAGAGAGAAACAATAGAGTGAAAGAATCAATGATAATCCTGAAGAAGACTAGTCCGTGTGTAAATGAAGATACTATTACTACCTCAGGTGAAACAAATTCTGAGGATAGTTATAGTAGAGCAAGCGAAATGCTCCCCGATGTTGAAGCAAGAGTGATGGAGAATGAAGTACTCATTGAGATCCATTGTGAGAAAGAAGATGGGGTTCAGCTCAAAATATTGGACCAACTTGAAAATCTTGATCTGTCTGTCACCGCCAGCAGCATAATGCCCTTTGGGAATTCAACTCTTGGCATTACTATCATCGCTCAGATGGGTGACGCGTACGGGATGACGGTGAATGATTTGGTGAAAAACCTAAGGCAAGTGCTGTTGAGTCACATGAACAACAATACCGATCCGTACTAG 981 0.4485 MEESWENWALDMEMEYDRDLLEEWLSEVEEEEFLREILSQPALSSESESQPFVEKRVGGDGSSLSSDETVTVGPGKRAPRSSSSSRAYILSFDNSTIIPATPELQLHANNCHGGTRNSNLASKKPKQGKRGRTGSQTLDHIMAERKRRQQLTERFIALSATIPGLKKTDKSSILCEAINYVKQLQERVTELEERNNRVKESMIILKKTSPCVNEDTITTSGETNSEDSYSRASEMLPDVEARVMENEVLIEIHCEKEDGVQLKILDQLENLDLSVTASSIMPFGNSTLGITIIAQMGDAYGMTVNDLVKNLRQVLLSHMNNNTDPY 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00058 326 Coils Coil 181 208 - -
Cca10g00058 326 SMART finulus 141 190 IPR011598 GO:0046983
Cca10g00058 326 MobiDBLite consensus disorder prediction 108 139 - -
Cca10g00058 326 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 321 - -
Cca10g00058 326 MobiDBLite consensus disorder prediction 62 84 - -
Cca10g00058 326 Gene3D - 129 201 IPR036638 GO:0046983
Cca10g00058 326 PANTHER BHLH TRANSCRIPTION FACTOR 1 321 - -
Cca10g00058 326 MobiDBLite consensus disorder prediction 108 122 - -
Cca10g00058 326 MobiDBLite consensus disorder prediction 38 84 - -
Cca10g00058 326 Pfam Helix-loop-helix DNA-binding domain 140 185 IPR011598 GO:0046983
Cca10g00058 326 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 207 IPR036638 GO:0046983
Cca10g00058 326 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 135 184 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00058 Cca-Chr10 702008 704217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00058 68 315 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 37.778 6.50e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca10g00058 HLH 1.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00058 - - aprc:113856039 365.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00058 10 702008 704217 Cca11g00120 11 1396910 1404191 PCT
Cca11g00121 11 1427747 1433769 Cca10g00058 10 702008 704217 PCT