Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00055 ATGAATCTTCTTCTTCTGTTGTTGTTGCCTATTTGGGTGCTAAGCATTTCTCTTTCCTCACCAATTCTTCATGCTGCAAATGCACAAGCTGAATCTCCAGGAATTCAGGAGGTTAACATAGTGCACCACCAGAATTTGAATAAGAGAATTCTAATCGCACTAATTGCTTGTTCTGCTCTTCTGGGTGGAGTCTTCCTATTCTTATTATATGTGTGTTTCCGTCGACATCAAAACTTAATATGCTCCAGTAGTAAAAGCCAAGAAACCATTGAGGATGCAAAAGGGGAAGCATTAAGCTCGGTTAATGCAAAACTTAACTACTCTAGGATGGCAGATAAGAAGAGTTCAGTTGCTATTTTTGACTATCAGCTGTTAGAGGCTGCAACAAACAGCTTTAGCACAAGTAATATTATGAGAGAGAGTGGTTCTAGAATTGTTTACAGAGCTCGTTTTGATGAACATTTCCAAGCAGCTGTGAAGAAAGCAGATAGTGATGCTGATAGAGAATTTGAGAATGAAGTGAGTTGGTTGAGCAAGATACGGCATCAGAATATCATAAAACTTATGGGCTATTGTATTCATGGTGAATCGAGGTTTCTTGTTTATGAATTGATGGAGAATGGATCTCTGGAAACTCAATTGCATGGGCCTAATCGGGGTTCATCTTTAACTTGGCATCTCAGGTTAAAAATTGCTGTTGATGTTGCCAGAGCATTAGAATATCTCCACGAGCACTCCAATCCTCCTGTGGTTCATAGAGACCTAAAATCTTCTAATGTTCTTCTGGATTCTAACTTTAATGCCAAGTTATCAGATTTTGGATTTGCTATGGTTTCTGGAATGCAACACAAGAACATGAAGATGTCAGGAACTTTAGGATATGTGGCCCCCGAGTACATATCACATGGTAAATTAACTGACAAGAGTGATGTCTATGCTTTTGGGGTTGTTCTTCTGGAACTTCTAACGGGGAAAAAACCCATGGAGAACATGTCCACGGATCAATATGAATCCCTTGTATCATGGGCCATGCCCCAGCTAACTGACAGATCAAAGCTTCCAAGTATTCTGGATCCTGTTATCAGAAACACAATGGATTTGAAGCATTTATATCAGGTTGCTGCAGTGGCTGTACTCTGCGTGCAAGCAGAACCAAGTTATAGGCCATTAATAACAGATGTGTTGCACTCTCTCATCCCTTTGGTACCCGTTGAGCTTGGAGGGTCACTAAGAGTTACAGAACCAATCAGCTCAGACAACTCTCAATGA 1269 0.4043 MNLLLLLLLPIWVLSISLSSPILHAANAQAESPGIQEVNIVHHQNLNKRILIALIACSALLGGVFLFLLYVCFRRHQNLICSSSKSQETIEDAKGEALSSVNAKLNYSRMADKKSSVAIFDYQLLEAATNSFSTSNIMRESGSRIVYRARFDEHFQAAVKKADSDADREFENEVSWLSKIRHQNIIKLMGYCIHGESRFLVYELMENGSLETQLHGPNRGSSLTWHLRLKIAVDVARALEYLHEHSNPPVVHRDLKSSNVLLDSNFNAKLSDFGFAMVSGMQHKNMKMSGTLGYVAPEYISHGKLTDKSDVYAFGVVLLELLTGKKPMENMSTDQYESLVSWAMPQLTDRSKLPSILDPVIRNTMDLKHLYQVAAVAVLCVQAEPSYRPLITDVLHSLIPLVPVELGGSLRVTEPISSDNSQ 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00055 422 PANTHER OS01G0253100 PROTEIN 21 413 IPR045271 GO:0004714|GO:0006468
Cca10g00055 422 SMART serkin_6 132 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00055 422 ProSiteProfiles Protein kinase domain profile. 132 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00055 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672|GO:0006468
Cca10g00055 422 Gene3D Phosphorylase Kinase; domain 1 93 204 - -
Cca10g00055 422 Gene3D Transferase(Phosphotransferase) domain 1 205 403 - -
Cca10g00055 422 SUPERFAMILY Protein kinase-like (PK-like) 108 398 IPR011009 -
Cca10g00055 422 PANTHER RECEPTOR-LIKE KINASE 21 413 - -
Cca10g00055 422 Pfam Protein tyrosine and serine/threonine kinase 152 358 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00055 Cca-Chr10 669322 672775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00055 4 344 Receptor kinase-like Gene Family AT1G80640 47.826 5.18e-109 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Cca10g00055 PK_Tyr_Ser-Thr 1.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00055 - - gmx:100811188 729.169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00055 10 669322 672775 Cca10g00055 10 669322 672775 ECH