Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00052 ATGGCTAGACCCCAACAACGCTATCGTGGTGTCCGCCAGAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCTCTTTTGAAAACTAGAATATGGCTAGGAACGTTTGAAACAGCAGAAGATGCTGCTAGAGCGTACGATGAAGCAGCGAGGTTAATGTGTGGTCCAAAAGCACGCACCAATTTCCCTTACAACCCCAACGAGCCACAATCTTCTTCTTCCAAGCTCCTCTCAGCCACTTTAACCGCGAAGCTACACAAGTGTCACATGGCCTCACTCTCCCTTCAAATGAACAAGCAGAAACAATCAGCAAAAGAGCCTCAAGGGTCATCAAACTCGAGCAACGCCATTGCGGGAACAAGTTCTGACACGGGGTTTAGGTGGCCAGAGAAGAGACACGAGGAACTTCAATGGCTAGAAAGGCAAGTTGAGGTGGCAGAACAACACCAACAGTTTCAACCAGTTCTTGAAGATGATCACATTGAACAGATGATACAAGAGCTTCTTGATTATGGGTCAATGGAGCTTAGTTCTGTTGACTCGGCCTAA 552 0.4819 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFPYNPNEPQSSSSKLLSATLTAKLHKCHMASLSLQMNKQKQSAKEPQGSSNSSNAIAGTSSDTGFRWPEKRHEELQWLERQVEVAEQHQQFQPVLEDDHIEQMIQELLDYGSMELSSVDSA 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00052 183 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Cca10g00052 183 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Cca10g00052 183 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Cca10g00052 183 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Cca10g00052 183 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Cca10g00052 183 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Cca10g00052 183 PANTHER ETHYLENE RESPONSE FACTOR 1 179 - -
Cca10g00052 183 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 179 - -
Cca10g00052 183 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Cca10g00052 183 MobiDBLite consensus disorder prediction 97 123 - -
Cca10g00052 183 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Cca10g00052 183 MobiDBLite consensus disorder prediction 97 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00052 Cca-Chr10 649164 650060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00052 1 180 AP2-EREBP Transcription Factor Family AT5G25190 62.434 7.93e-77 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca10g00052 AP2 7.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00052 - - gmx:100805499 288.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00052 10 649164 650060 Cca10g00052 10 649164 650060 ECH