Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00051 ATGGAGCTTCTATTGTCAGAGCCAAGTCCATCCGAAAATCTGAACATCCCATTTTCAGAAACTCCACCACCATGTTCAAAGCCAGTACCTTCCATGGATATCCAAAAGGAGAAGAGGGATGACAAAAAACACCCCCGTGAGTCTGATCCCCACCTTCTACTTGATCTAAGTACCCCTGATACAGATTCAAGTGATGAATCAAAGCCAGAACTGAATCTCATCAACTGCATCGATACAAACTTATCCATGAACTCTTCAGAATCTAGTCATGGACAAGGTGATGAATTGGAGCCCCGGATATTCTCATGCAACTACTGCCAAAGAAAGTTCTATAGTTCTCAGGCACTTGGTGGACACCAGAATGCACATAAGCGTGAAAGAACTTTGGCAAAAAGAGGACACAAAGCTGGTGCTTCAGTTTCAATAGATTTTGCTCATAGGTACTCCAGCATGGCTTCTCTTCCCTTGCATGGCTCCTATAACAGGTCACTAGGAATTCAGGCTCATTCTATGATCAACAAACCCTCTTATAAAACACCCTTTTTTGGTTTGCCACGTTCTCATTCCCAAAATGGGTGGCAGAGGAGGCCTATGAATCTTCACGTTGGAGCAGAAACTGAATCATCCTTGGCTGGTGGCATCCCACTGTTAGGGAAGTTTTCTCCAAGGATGGTACCAGAGGGGTATGGTGGCTACTGGTTGGATAGTATTACGCATTTGAAGACTAAACAAGAGGAGTTGCAGAAGCTTGACTTGTCTCTCAAGCTTTAA 771 0.441 MELLLSEPSPSENLNIPFSETPPPCSKPVPSMDIQKEKRDDKKHPRESDPHLLLDLSTPDTDSSDESKPELNLINCIDTNLSMNSSESSHGQGDELEPRIFSCNYCQRKFYSSQALGGHQNAHKRERTLAKRGHKAGASVSIDFAHRYSSMASLPLHGSYNRSLGIQAHSMINKPSYKTPFFGLPRSHSQNGWQRRPMNLHVGAETESSLAGGIPLLGKFSPRMVPEGYGGYWLDSITHLKTKQEELQKLDLSLKL 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00051 256 ProSitePatterns Zinc finger C2H2 type domain signature. 103 123 IPR013087 -
Cca10g00051 256 MobiDBLite consensus disorder prediction 32 53 - -
Cca10g00051 256 MobiDBLite consensus disorder prediction 1 69 - -
Cca10g00051 256 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 32 256 - -
Cca10g00051 256 Gene3D Classic Zinc Finger 79 149 - -
Cca10g00051 256 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 128 IPR013087 -
Cca10g00051 256 SUPERFAMILY beta-beta-alpha zinc fingers 98 128 IPR036236 -
Cca10g00051 256 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 32 256 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00051 Cca-Chr10 633463 634501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00051 11 256 C2H2 Transcription Factor Family AT5G10970 37.918 2.49e-39 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca10g00051 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00051 - - gmx:100812573 381.719