Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00050 ATGGAGAATAACGAGGAAATCCCATCAACACCTGCAACGCCAGGCACTCCTGGTGCACCTCTTTTTGGAGGCTTCAACAATGGCAGTGGTAGGAATAAGAGCAACAAGTCACTTCTCAAGAGTTGCAGGTGCTTCAGCGTGGAGGAATGGAGCCTAGAAGATGGAGGCTTACCCGCAGTCTCATGCTCGCTGCCAGCCCCTCCGCCAGTCCCTCTCGCAAGGAAAGTTGGAGCAGAGTTCATCGGAACCTTCATTCTCATGTTCGCCGGCACCGCCGCTGCCATCGTCAACCAAAAGACAAACGGCTCCGAGACCCTCATCGGATGCGCCGCCACCACCGGCCTCGCCGTCATGATCGTCATCCTTGCCACCGGCCACATCTCCGGCGCTCATCTCAACCCCGCCGTCACCATTTCCTTTGCCGCATTGAAGCACTTCCCTTGGAAGCACGTTCCTATGTACATTGGTGCACAGGTTTTGGCTTCTATATGTGCCGCATTTGCTCTTAAGGCAGTTTACCACCCTTTCATGAGTGGAGGAGTTACCGTTCCTTCCGGAGGATATGCCCAAGCTTTTGCTTTGGAGTTCATTATTGCCTTCAATCTCATGTTCGTTGTCACTGCAGTTGCCACCGACACCAGAGCTGTGGGAGAACTGGCGGGAATCGCGGTGGGAGCAACTGTGATGCTAAATATACTCATAGCAGGGCCAGTATCAGGGGGCTCAATGAACCCAGTAAGAACACTAGGTCCTGCTGTAGCTGCAAACAACTACAAAGCCATATGGGTCTATCTGGTAGCTCCCATACTTGGTGCTTTAGGTGGGGCAGGAACCTACACTGCAGTCAAGCTGCCTGAAGAAGATGATGACGCCAAGGCAAAGGCTTCAATCAGCTTCAGAAGGTGA 906 0.5309 MENNEEIPSTPATPGTPGAPLFGGFNNGSGRNKSNKSLLKSCRCFSVEEWSLEDGGLPAVSCSLPAPPPVPLARKVGAEFIGTFILMFAGTAAAIVNQKTNGSETLIGCAATTGLAVMIVILATGHISGAHLNPAVTISFAALKHFPWKHVPMYIGAQVLASICAAFALKAVYHPFMSGGVTVPSGGYAQAFALEFIIAFNLMFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPVSGGSMNPVRTLGPAVAANNYKAIWVYLVAPILGALGGAGTYTAVKLPEEDDDAKAKASISFRR 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00050 301 SUPERFAMILY Aquaporin-like 71 288 IPR023271 -
Cca10g00050 301 Pfam Major intrinsic protein 72 278 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca10g00050 301 CDD MIP 74 279 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca10g00050 301 PANTHER BNAA02G36290D PROTEIN 5 295 - -
Cca10g00050 301 PRINTS Major intrinsic protein family signature 74 93 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca10g00050 301 PRINTS Major intrinsic protein family signature 113 137 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca10g00050 301 PRINTS Major intrinsic protein family signature 150 169 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca10g00050 301 PRINTS Major intrinsic protein family signature 194 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca10g00050 301 PRINTS Major intrinsic protein family signature 225 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca10g00050 301 PRINTS Major intrinsic protein family signature 262 282 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca10g00050 301 MobiDBLite consensus disorder prediction 1 26 - -
Cca10g00050 301 Gene3D Glycerol uptake facilitator protein. 68 294 IPR023271 -
Cca10g00050 301 PANTHER AQUAPORIN NIP2-1 5 295 IPR034294 -
Cca10g00050 301 ProSitePatterns MIP family signature. 131 139 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00050 Cca-Chr10 578699 582875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00050 3 301 Major Intrinsic Protein MIP AT1G80760 77.524 9.31e-166 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00050 K09874 - gmx:100815637 513.072