Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00049 ATGGTTTCTCATATAAATTTCCAAAATTTTCAGGATTTTCGTATCAGAAGCACAGAGCTAAGGATTACGGCCGTTCAGTCCCCAGCAAGGAAGCAGACTCTGTCTTTTGAGATCAACAACAAAACATGTCGGGTGAAGAAGGAGCTGTTGCAGTGGAGGCACCTGCTGCTGCAATTCCAGCATGCTGCCCAGCTCTGTGTTCTAGCAGAAGATTGCGACCAACCTGACTATGTGAAATTAGTGAAGGCCCTTTGTGCAGAGCACAGTGTTAGCCTTTTGACAGTTCCAAGTGCAAAGACTCTTGGAGAATGGGCTGGTTTGTGTAAGATTGATTCTGAAGGAAAGGCTAGGAAGGTAACTGGTTGCTCATGTGTGGTTGTCAAGGATTTTGGGGAGGAACATGAAGCCTATAATGTTGTTCTGCAGCATGTGAAATCTAACTAA 444 0.4482 MVSHINFQNFQDFRIRSTELRITAVQSPARKQTLSFEINNKTCRVKKELLQWRHLLLQFQHAAQLCVLAEDCDQPDYVKLVKALCAEHSVSLLTVPSAKTLGEWAGLCKIDSEGKARKVTGCSCVVVKDFGEEHEAYNVVLQHVKSN 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00049 147 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 61 126 IPR004038 -
Cca10g00049 147 PANTHER 40S RIBOSOMAL PROTEIN S12 60 147 IPR000530 GO:0003735|GO:0005840|GO:0006412
Cca10g00049 147 Gene3D - 38 147 IPR029064 -
Cca10g00049 147 SUPERFAMILY L30e-like 61 145 IPR029064 -
Cca10g00049 147 PRINTS Ribosomal protein S12E family signature 117 130 IPR000530 GO:0003735|GO:0005840|GO:0006412
Cca10g00049 147 PRINTS Ribosomal protein S12E family signature 92 113 IPR000530 GO:0003735|GO:0005840|GO:0006412
Cca10g00049 147 PANTHER 40S RIBOSOMAL PROTEIN S12 60 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00049 Cca-Chr10 567171 568954 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00049 63 147 Cytoplasmic Ribosomal Protein Gene Family AT2G32060 81.176 2.12e-48 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00049 K02951 - gmx:100499723 180.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00049 10 567171 568954 Cca11g00092 11 1029302 1035569 PCT